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[179135_at]

Description R10E8.3 /REP_DB=WormBase Gene ID /WP=CE18911 /TR=Q9XUR7 /GB=CAB04644.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 08      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 77.2
(-3)
A 		88.1
(-2.5)
A 		155.3
(0.4)
P 		213.7
(3)
P 		137
B 75
(-3)
A 		95.3
(-2.4)
A 		135.8
(-1.1)
P 		271.3
(3)
P 		196
C 67
(-3)
A 		90.7
(-2.1)
A 		79.8
(-2.5)
P 		232.5
(3)
P 		166
avr 73.1
(-3) 		91.4
(-2.3) 		123.6
(-1.2) 		239.2
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 49.7
(-2.4)
A 		45.1
(-2.9)
A 		85
(1.4)
A 		89.2
(1.8)
A 		44.1
(-3)
A 		100.2
(3)
A 		56
B 68.9
(-0.1)
A 		55.3
(-1.3)
M 		78
(0.6)
A 		35
(-3)
A 		91.8
(1.8)
P 		105.9
(3)
P 		71
C 68.5
(0.3)
A 		87.9
(1.7)
A 		55
(-0.6)
A 		19.5
(-3)
A 		77.9
(1)
A 		107.5
(3)
P 		88
avr 62.4
(-1.5) 		62.8
(-1.4) 		72.7
(-0.4) 		47.9
(-3) 		71.3
(-0.5) 		104.5
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 28.1
(-0.5)
A 		19.1
(-3)
A 		40.6
(3)
P 		31.3
(0.4)
P 		22
B 23.9
(-2.9)
A 		23.5
(-3)
A 		31.5
(-1.6)
P 		57.8
(3)
P 		34
C 22.2
(-3)
A 		26.1
(-1.6)
A 		27.8
(-1)
P 		39.2
(3)
P 		17
avr 24.7
(-2.5) 		22.9
(-3) 		33.3
(0.1) 		42.8
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 9.2
(-3)
A 		16
(-0.3)
A 		18.5
(0.7)
A 		22.6
(2.3)
A 		13.3
(-1.4)
A 		24.4
(3)
A 		15
B 24
(-0.1)
A 		18.4
(-1.2)
M 		18.9
(-1.1)
A 		9.3
(-3)
A 		37.3
(2.6)
P 		39.5
(3)
P 		30
C 25.4
(1)
A 		26.8
(1.3)
A 		14
(-1.1)
A 		3.9
(-3)
A 		25.2
(1)
A 		36
(3)
P 		32
avr 19.5
(-0.9) 		20.4
(-0.6) 		17.1
(-1.5) 		11.9
(-3) 		25.3
(0.8) 		33.3
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14405
Sequence Type Exemplar sequence
Representative Public ID R10E8.3 NCBI
Target Description R10E8.3 /REP_DB=WormBase Gene ID /WP=CE18911 /TR=Q9XUR7 /GB=CAB04644.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075166(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075166 NCBI Caenorhabditis elegans R10E8.3 (R10E8.3) mRNA, complete cds. 11/11 None
SNAP00000042676 ENSEMBL cdna:SNAP chromosome:CEL140:V:18237139:18239057:-1 11/11 None
GENEFINDER00000042688 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18237139:18246540:-1 11/11 None
R10E8.3 ENSEMBL cdna:known chromosome:CEL140:V:18237104:18239331:-1 gene:R10E8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18237138-18239057(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E8.3
Entrez Gene 180192 Entrez gene
SwissProt Q9XUR7 EMBL-EBI
WormBase CE18911 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04644 Hypothetical protein R10E8.3 [Caenorhabditis elegans] ref|NP_507567.1| R10E8.3 [Caenorhabditis elegans] 0.0
blast CAB04644 Hypothetical protein R10E8.3 [Caenorhabditis elegans] ref|NP_507567.1| R10E8.3 [Caenorhabditis elegans] 1.0E-178
blast CAB04643 Hypothetical protein R10E8.1 [Caenorhabditis elegans] ref|NP_507568.2| R10E8.1 [Caenorhabditis elegans] 1.0E-159
blast CAB04641 Hypothetical protein R10E8.4 [Caenorhabditis elegans] ref|NP_507569.1| R10E8.4 [Caenorhabditis elegans] 2.0E-96
blast CAB04641 Hypothetical protein R10E8.4 [Caenorhabditis elegans] ref|NP_507569.1| R10E8.4 [Caenorhabditis elegans] 2.0E-86
blast CAB04641 Hypothetical protein R10E8.4 [Caenorhabditis elegans] ref|NP_507569.1| R10E8.4 [Caenorhabditis elegans] 2.0E-45
blast CAB04506 Hypothetical protein F57G4.1 [Caenorhabditis elegans] ref|NP_507457.1| F57G4.1 [Caenorhabditis elegans] 5.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0011
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0011
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.0E-20
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0011
Sequence
Target Sequence 
>C. ELEGANS:179135_AT
ttggaattttcctgggctcgtttaggaacaagatttctatggcccacttggagctgaaag
ggagcagtgagctggagtttattcagcttctggattgccttgatgcgaagaaattgagaa
aacttacgatcttcgcgactgttggtgatgttaacaatgggaatcaggccctcgcgctaa
atcaaataagagatacccctcactggaaccatgccactgagttggtcgttaaaggagcga
atgcatctgtgtccatccgaaaattgattcattttttgaaagggacagcttacgtggaga
ctattccagttggagatgtgctcttcttggcgcaggaactccttgcttcttcactttcaa
gaaatttcaagctctccacttcgaacaacttcgacttgcaaagcctaatacattcgatcg
ggtgtcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAATTTTCCTGGGCTCGTTTAG 564 1 1034 Antisense
AGATTTCTATGGCCCACTTGGAGCT 5 65 1064 Antisense
CAGCTTCTGGATTGCCTTGATGCGA 199 205 1117 Antisense
TTACGATCTTCGCGACTGTTGGTGA 194 683 1157 Antisense
GGCCCTCGCGCTAAATCAAATAAGA 572 541 1200 Antisense
GAACCATGCCACTGAGTTGGTCGTT 21 345 1239 Antisense
GGAGCGAATGCATCTGTGTCCATCC 19 521 1267 Antisense
GGGACAGCTTACGTGGAGACTATTC 698 493 1315 Antisense
AAGAAATTTCAAGCTCTCCACTTCG 307 153 1392 Antisense
GAACAACTTCGACTTGCAAAGCCTA 636 351 1416 Antisense
TAATACATTCGATCGGGTGTCCTCC 551 635 1439 Antisense
Sequence Source Affymetrix Proprietary Database