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[179134_s_at]

Description B0491.3 /REP_DB=WormBase Gene ID /WP=CE02105 /TR=Q17510 /GB=CAA90085.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 7
(-3)
A 		11.9
(0.6)
A 		13.3
(1.6)
A 		15.2
(3)
A 		8
B 6.7
(-3)
A 		26.2
(-0.2)
A 		48.8
(3)
A 		20
(-1.1)
A 		42
C 9.4
(-3)
A 		37.8
(3)
A 		10
(-2.9)
A 		36.7
(2.8)
A 		28
avr 7.7
(-3) 		25.3
(3) 		24
(2.6) 		24
(2.6) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 28.5
(-2.9)
A 		23.9
(-3)
A 		22.9
(-3)
A 		54.1
(-2.4)
P 		187.8
(0.2)
P 		329.2
(3)
P 		306
B 16.8
(-2.8)
A 		29.8
(-2.5)
A 		4.6
(-3)
A 		46
(-2.2)
A 		199.2
(0.6)
P 		327.8
(3)
P 		323
C 19.4
(-2.7)
A 		33.9
(-2.5)
A 		2.9
(-3)
A 		63.2
(-2)
A 		239.3
(0.9)
P 		364.5
(3)
P 		362
avr 21.6
(-2.8) 		29.2
(-2.7) 		10.1
(-3) 		54.4
(-2.2) 		208.8
(0.6) 		340.5
(3) 		330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.5
(-1.6)
A 		2.6
(-1.2)
A 		3.5
(3)
A 		2.2
(-3)
A 		1
B 2.1
(-3)
A 		6.5
(-0.1)
A 		11.3
(3)
A 		4.3
(-1.6)
A 		9
C 3.1
(-3)
A 		10.9
(3)
A 		3.5
(-2.7)
A 		6.2
(-0.6)
A 		8
avr 2.6
(-3) 		6.7
(3) 		6.1
(2.1) 		4.2
(-0.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 5.3
(-3)
A 		8.5
(-2.7)
A 		5
(-3)
A 		13.7
(-2.3)
P 		56.7
(1.1)
P 		80.1
(3)
P 		75
B 5.9
(-2.8)
A 		9.9
(-2.6)
A 		1.1
(-3)
A 		12.2
(-2.5)
A 		80.9
(1)
P 		122.2
(3)
P 		121
C 7.2
(-2.7)
A 		10.3
(-2.5)
A 		0.7
(-3)
A 		12.7
(-2.4)
A 		77.4
(0.8)
P 		122
(3)
P 		121
avr 6.1
(-2.8) 		9.6
(-2.6) 		2.3
(-3) 		12.9
(-2.4) 		71.7
(0.9) 		108.1
(3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179134_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3434
Sequence Type Exemplar sequence
Representative Public ID B0491.3 NCBI
Target Description B0491.3 /REP_DB=WormBase Gene ID /WP=CE02105 /TR=Q17510 /GB=CAA90085.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064021 NCBI Caenorhabditis elegans B0491.3 (B0491.3) mRNA, complete cds. 11/11 None
SNAP00000040218 ENSEMBL cdna:SNAP chromosome:CEL140:II:11338456:11340622:-1 11/11 None
B0491.3 ENSEMBL cdna:known chromosome:CEL140:II:11338357:11339505:-1 gene:B0491.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040231 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5068922-5069750(+) 92.18 92.18
chrII:11338452-11339434(-) 99.71 99.71
Public Domain and Genome References
Gene Title
Ensembl B0491.3
Entrez Gene 174732 Entrez gene
SwissProt Q17510 EMBL-EBI
WormBase CE02105 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.10801.1.A1_S_AT similar to PYST9371 gga
CHICKEN:GGAAFFX.23253.1.S1_AT similar to PYST9371 gga
CHICKEN:GGAAFFX.23253.1.S1_S_AT similar to PYST9371 gga
CHICKEN:GGAAFFX.6669.1.S1_AT similar to PYST9371 gga
Protein Similarities
Method ID Description E-Value
blast CAA90085 Hypothetical protein B0491.3 [Caenorhabditis elegans] ref|NP_496422.1| B0491.3 [Caenorhabditis elegans] 1.0E-128
blast CAA90085 Hypothetical protein B0491.3 [Caenorhabditis elegans] ref|NP_496422.1| B0491.3 [Caenorhabditis elegans] 1.0E-127
blast AAK85491 Hypothetical protein R13H9.1 [Caenorhabditis elegans] ref|NP_500717.1| R13H9.1 [Caenorhabditis elegans] 1.0E-125
blast AAC26940 Hypothetical protein F36H12.11 [Caenorhabditis elegans] ref|NP_500757.1| F36H12.11 [Caenorhabditis elegans] 1.0E-117
blast AAC26940 Hypothetical protein F36H12.11 [Caenorhabditis elegans] ref|NP_500757.1| F36H12.11 [Caenorhabditis elegans] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:179134_S_AT
atgagaagtcagcttgtgttccaaaagctcaacgcaaggcaagtgtcactgaaggactca
agtttgccgaagaagctgtccagaaggatccaaaccatttcaaggcattgaagtggaatg
cagtgttgactggacaagcaaccgaatacatggcaaccaaggaaaagttggaatgcagta
agaagttcaaggaattgctcgacaaaactcttgccaaggagccaaaggacacagctgttc
tccatttgcgtggccgttataagtactcggtggcgtctctgacatggctcgagaagaagc
ttgctgccactttctatcagcaaccaccatcgcattcgtatgaggaggccaacgaggatt
tccttgctgcttacaaggtcaatccgaagtggatggagaacactttctacgtgtccaaat
gctacgtggctattaaagacaaggccaacgctcgcaagtatctcactgaagtttgcgaca
tcgagccgtattcggacgctgagcaggagtttgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGAAGTCAGCTTGTGTTCCAAA 270 45 143 Antisense
ATTGCTCGACAAAACTCTTGCCAAG 323 7 336 Antisense
AAAGGACACAGCTGTTCTCCATTTG 485 121 366 Antisense
TATAAGTACTCGGTGGCGTCTCTGA 121 655 400 Antisense
GCGTCTCTGACATGGCTCGAGAAGA 473 291 415 Antisense
CAACCACCATCGCATTCGTATGAGG 245 187 463 Antisense
TTGCTGCTTACAAGGTCAATCCGAA 426 691 506 Antisense
CACTTTCTACGTGTCCAAATGCTAC 365 195 543 Antisense
AACGCTCGCAAGTATCTCACTGAAG 556 145 589 Antisense
GACATCGAGCCGTATTCGGACGCTG 210 369 619 Antisense
CGGACGCTGAGCAGGAGTTTGCCGA 338 243 635 Antisense
Sequence Source Affymetrix Proprietary Database