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[179130_at]

Description ZK930.3 /REP_DB=WormBase Gene ID /WP=CE06673 /TR=Q23664 /GB=CAA94170.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 50      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 143.3
(-3)
P 		197.5
(3)
M 		186.6
(1.8)
A 		178.4
(0.9)
A 		54
B 220.6
(0.4)
A 		289.6
(3)
P 		233.6
(0.9)
A 		131.4
(-3)
A 		158
C 170.7
(-1.8)
P 		332.8
(3)
P 		201.8
(-0.9)
P 		129.1
(-3)
A 		204
avr 178.2
(-1.5) 		273.3
(3) 		207.3
(-0.1) 		146.3
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 257.2
(2.9)
P 		259.4
(3)
P 		190.2
(-1.3)
P 		162.1
(-3)
A 		187.2
(-1.5)
A 		180.6
(-1.9)
M 		97
B 291.2
(3)
P 		229
(0.5)
P 		203.1
(-0.6)
P 		189.4
(-1.2)
A 		144.3
(-3)
A 		152.3
(-2.7)
P 		147
C 237
(2.1)
P 		249.7
(3)
P 		161.9
(-3)
A 		204.4
(-0.1)
A 		215.1
(0.6)
P 		169.9
(-2.5)
P 		88
avr 261.8
(3) 		246
(2) 		185.1
(-1.9) 		185.3
(-1.9) 		182.2
(-2.1) 		167.6
(-3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 52.2
(3)
P 		42.9
(0.9)
M 		48.8
(2.2)
A 		26.1
(-3)
A 		26
B 70.4
(2.8)
A 		71.5
(3)
P 		54.1
(0.6)
A 		28
(-3)
A 		44
C 56.5
(-0.2)
P 		95.7
(3)
P 		70.3
(0.9)
P 		21.8
(-3)
A 		74
avr 59.7
(1.6) 		70
(3) 		57.7
(1.3) 		25.3
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 47.4
(-2.3)
P 		92.2
(3)
P 		41.4
(-3)
P 		41.1
(-3)
A 		56.5
(-1.2)
A 		44
(-2.7)
M 		51
B 101.3
(3)
P 		76.2
(0.1)
P 		49.3
(-3)
P 		50.2
(-2.9)
A 		58.6
(-1.9)
A 		56.8
(-2.1)
P 		52
C 87.8
(3)
P 		76.2
(1.5)
P 		41.2
(-3)
A 		41.1
(-3)
A 		69.6
(0.7)
P 		56.9
(-1)
P 		47
avr 78.8
(2.6) 		81.5
(3) 		44
(-3) 		44.1
(-3) 		61.6
(-0.2) 		52.6
(-1.6) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2697
Sequence Type Exemplar sequence
Representative Public ID ZK930.3 NCBI
Target Description ZK930.3 /REP_DB=WormBase Gene ID /WP=CE06673 /TR=Q23664 /GB=CAA94170.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027364(10), NM_001027365(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027364 NCBI Caenorhabditis elegans ZK930.3a (ZK930.3) mRNA, complete cds. 10/11 None
NM_001027365 NCBI Caenorhabditis elegans ZK930.3b (ZK930.3) mRNA, complete cds. 10/11 None
SNAP00000000323 ENSEMBL cdna:SNAP chromosome:CEL140:II:11897356:11898907:-1 10/11 None
GENEFINDER00000000327 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11896877:11898907:-1 10/11 None
ZK930.3a ENSEMBL cdna:known chromosome:CEL140:II:11897356:11901116:-1 gene:ZK930.3 10/11 None
ZK930.3b ENSEMBL cdna:known chromosome:CEL140:II:11897998:11898907:-1 gene:ZK930.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11897994-11899441(-) 91.98 100.0
Public Domain and Genome References
Ensembl ZK930.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94170 Hypothetical protein ZK930.3a [Caenorhabditis elegans] ref|NP_001022535.1| ZK930.3a [Caenorhabditis elegans] 1.0E-127
blast CAA94170 Hypothetical protein ZK930.3a [Caenorhabditis elegans] ref|NP_001022535.1| ZK930.3a [Caenorhabditis elegans] 1.0E-112
blast CAE59391 Hypothetical protein CBG02749 [Caenorhabditis briggsae] 1.0E-106
blast CAH19092 Hypothetical protein ZK930.3b [Caenorhabditis elegans] ref|NP_001022536.1| ZK930.3b [Caenorhabditis elegans] 1.0E-103
blast CAH19092 Hypothetical protein ZK930.3b [Caenorhabditis elegans] ref|NP_001022536.1| ZK930.3b [Caenorhabditis elegans] 1.0E-100
blast CAA94170 Hypothetical protein ZK930.3a [Caenorhabditis elegans] ref|NP_001022535.1| ZK930.3a [Caenorhabditis elegans] 1.0E-98
Sequence
Target Sequence 
>C. ELEGANS:179130_AT
gttgctcgaggagctcagcgagctggagaatactgaaaagtttatcaaggaaactgccaa
gactattgacgagttgaataaagagaaggaagagcattcggagattattcagttgataaa
ccaggacaaaagcgatttggaacgggaaattgctgcggcagagacggagaaaaaagatcg
agagagcaaaattgttaaaagatacgaagcactgctgaaattaattgagtccacaaatga
gaagcttaaggaaactggatgtgatattgctttgagccaagatgatctaccacagactca
tttgaaaatgcaccagattaaaagaatcatgttattatatttcagtgaacccccagcagc
tccagtcactccggttctatccggcggtcttccatctccatttccaaacttcaacttccg
aaatttgttccaaccaatgctacttgaacagcttggcagtttttcgacaaattcaccgac
cccacagttcaggccaccaccgcatatggctgcagccatgcagcatcatcaacttaaagt
caccgatcaccagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTCGAGGAGCTCAGCGAGCTG 24 439 222 Antisense
GAAACTGCCAAGACTATTGACGAGT 569 357 271 Antisense
TGGAACGGGAAATTGCTGCGGCAGA 567 547 359 Antisense
GCTTTGAGCCAAGATGATCTACCAC 285 303 490 Antisense
GATCTACCACAGACTCATTTGAAAA 622 419 505 Antisense
TTATATTTCAGTGAACCCCCAGCAG 615 679 556 Antisense
AATTTGTTCCAACCAATGCTACTTG 115 175 643 Antisense
GAACAGCTTGGCAGTTTTTCGACAA 170 351 667 Antisense
CCACCGCATATGGCTGCAGCCATGC 95 275 718 Antisense
GCAGCCATGCAGCATCATCAACTTA 351 315 733 Antisense
AACTTAAAGTCACCGATCACCAGTC 352 139 752 Antisense
Sequence Source Affymetrix Proprietary Database