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[179129_at]

Description ZK262.1 /REP_DB=WormBase Gene ID /WP=CE19321 /TR=Q9XTR9 /GB=CAB16545.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 07      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 62.1
(2)
A 		7.4
(-3)
A 		23.7
(-1.5)
A 		72.6
(3)
A 		65
B 43.6
(3)
A 		20.2
(-0.9)
A 		25.4
(-0)
A 		7.5
(-3)
A 		36
C 42.2
(1.6)
A 		10.4
(-3)
A 		47.1
(2.3)
A 		52
(3)
A 		42
avr 49.3
(3) 		12.7
(-3) 		32.1
(0.2) 		44
(2.1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 70.1
(3)
A 		41.5
(0.5)
A 		2.9
(-2.9)
A 		1.9
(-3)
A 		42.8
(0.6)
A 		20.5
(-1.4)
A 		68
B 18
(0.2)
A 		7.1
(-3)
A 		23.6
(1.8)
A 		27.7
(3)
A 		19
(0.4)
A 		27.8
(3)
A 		21
C 42.8
(2.1)
A 		29.6
(-0.7)
A 		25.3
(-1.7)
A 		47.1
(3)
A 		27.6
(-1.2)
A 		19
(-3)
A 		28
avr 43.6
(3) 		26.1
(-1) 		17.3
(-3) 		25.6
(-1.1) 		29.8
(-0.1) 		22.4
(-1.8) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.6
(3)
A 		1.6
(-3)
A 		6.2
(-1.7)
A 		10.6
(-0.4)
A 		21
B 13.9
(3)
A 		5
(-1.3)
A 		5.9
(-0.9)
A 		1.6
(-3)
A 		12
C 14
(1.9)
A 		3
(-3)
A 		16.4
(3)
A 		8.8
(-0.4)
A 		13
avr 16.8
(3) 		3.2
(-3) 		9.5
(-0.2) 		7
(-1.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 12.9
(2.2)
A 		14.7
(3)
A 		0.6
(-3)
A 		0.5
(-3)
A 		12.9
(2.2)
A 		5
(-1.1)
A 		14
B 6.3
(-0.1)
A 		2.4
(-3)
A 		5.7
(-0.5)
A 		7.3
(0.7)
A 		7.7
(1)
A 		10.4
(3)
A 		8
C 15.9
(3)
A 		9
(-1.4)
A 		6.4
(-3)
A 		9.5
(-1)
A 		8.9
(-1.4)
A 		6.4
(-3)
A 		10
avr 11.7
(3) 		8.7
(0.6) 		4.2
(-3) 		5.8
(-1.7) 		9.8
(1.5) 		7.3
(-0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14028
Sequence Type Exemplar sequence
Representative Public ID ZK262.1 NCBI
Target Description ZK262.1 /REP_DB=WormBase Gene ID /WP=CE19321 /TR=Q9XTR9 /GB=CAB16545.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075200 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-207) (srh-207) mRNA, complete cds. 11/11 None
GENEFINDER00000013669 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18404457:18415503:-1 10/11 None
ZK262.1 ENSEMBL cdna:known chromosome:CEL140:V:18411617:18412816:-1 gene:ZK262.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013658 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18411616-18412816(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-207
Ensembl ZK262.1
Entrez Gene 191266 Entrez gene
SwissProt Q9XTR9 EMBL-EBI
WormBase CE36073 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16545 Hypothetical protein ZK262.1 [Caenorhabditis elegans] ref|NP_507601.2| Serpentine Receptor, class H family member (srh-207) [Caenorhabditis elegans] 0.0
blast CAB16547 Hypothetical protein ZK262.2 [Caenorhabditis elegans] ref|NP_507602.1| ZK262.2 [Caenorhabditis elegans] 0.0
blast CAB16545 Hypothetical protein ZK262.1 [Caenorhabditis elegans] ref|NP_507601.2| Serpentine Receptor, class H family member (srh-207) [Caenorhabditis elegans] 1.0E-173
blast CAB16546 Hypothetical protein ZK262.3 [Caenorhabditis elegans] ref|NP_507603.1| ZK262.3 [Caenorhabditis elegans] 1.0E-168
blast CAB16552 Hypothetical protein ZK262.11 [Caenorhabditis elegans] ref|NP_507600.2| Serpentine Receptor, class H family member (srh-209) [Caenorhabditis elegans] 1.0E-139
blast CAB03964 Hypothetical protein C43D7.6 [Caenorhabditis elegans] ref|NP_507762.2| Serpentine Receptor, class H family member (srh-208) [Caenorhabditis elegans] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.7E-15
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-119
Pfam IPR002921 EMBL-EBI Lipase, class 3 6.4E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507601.2 7 20-42,55-77,97-119,140-162,202-224,245-267,277-299
ZK262.1 7 20-42,55-77,97-119,140-162,202-224,245-267,277-299
GENEFINDER00000013669 12 443-465,478-500,520-542,563-585,628-650,671-693,837-859,872-894,914-936,957-979,1018-1040,1061-1083
Sequence
Target Sequence 
>C. ELEGANS:179129_AT
ttatttcaccattgtttctaccctatcaatatatagtttacccatcactactgtcaagtg
ggttgttatttataccggatcaggaaacggcattgaaggcaatgtttaaggtagcggatt
cgaccctcccctgcctacccagcgagatctacgaagcagacatatatgtgatagttgaag
acatgacccttcacgcaataatgatctctatcggtgtatcaggagtccttatccaagtgg
tattttttgtcggctcactgttatatagtagtttggagcagttgagagcaaggacaatgt
cacagaagacgttccagatgcagaagcagttcctcatcgctgtgattctacaaagttcag
tccccttggtttgctttgcaattccaattatctattttttaattgcatatttaaaaaact
attataatcagggaattatcaactgtctatttataaatacgtcgactcatggcctgatct
ctgccatagccctggtgacccttcacaagccgtatcgggcggcggtgttggtgatgattg
ccaaaacaccggagctgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTCACCATTGTTTCTACCCTA 498 677 425 Antisense
AGTTTACCCATCACTACTGTCAAGT 164 59 459 Antisense
CCTACCCAGCGAGATCTACGAAGCA 165 269 558 Antisense
AAGACATGACCCTTCACGCAATAAT 568 153 602 Antisense
CTATCGGTGTATCAGGAGTCCTTAT 364 217 632 Antisense
ATTCTACAAAGTTCAGTCCCCTTGG 480 9 769 Antisense
TCCCCTTGGTTTGCTTTGCAATTCC 24 589 785 Antisense
TAAATACGTCGACTCATGGCCTGAT 202 641 878 Antisense
TCATGGCCTGATCTCTGCCATAGCC 364 623 891 Antisense
ACAAGCCGTATCGGGCGGCGGTGTT 614 109 929 Antisense
GATTGCCAAAACACCGGAGCTGAGA 190 433 960 Antisense
Sequence Source Affymetrix Proprietary Database