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[179128_at]

Description F44F4.9 /REP_DB=WormBase Gene ID /WP=CE01004 /TR=Q20407 /GB=CAA85458.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 3.9
(-3)
A 		5.1
(-2.8)
A 		5.4
(-2.7)
A 		39
(3)
A 		35
B 3.5
(-1.2)
A 		5.4
(3)
A 		2.7
(-3)
A 		4.6
(1.2)
A 		3
C 5.4
(-3)
A 		6.1
(-2.8)
A 		28.5
(3)
A 		7.6
(-2.4)
A 		23
avr 4.3
(-3) 		5.5
(-2.4) 		12.2
(0.7) 		17.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 10.9
(3)
A 		3.7
(-2.1)
A 		2.4
(-3)
A 		8.3
(1.2)
A 		9.5
(2)
A 		10
(2.4)
A 		9
B 3.4
(-2.1)
A 		5.4
(2.3)
A 		4.7
(0.8)
A 		3
(-3)
A 		5.7
(3)
A 		5.1
(1.7)
A 		3
C 3.7
(-3)
A 		6.8
(1.4)
A 		3.7
(-3)
A 		4.8
(-1.4)
A 		6.7
(1.3)
A 		7.9
(3)
A 		4
avr 6
(0.5) 		5.3
(-0.5) 		3.6
(-3) 		5.4
(-0.4) 		7.3
(2.4) 		7.7
(3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.4
(-2.6)
A 		1.1
(-3)
A 		1.4
(-2.6)
A 		5.7
(3)
A 		5
B 1.1
(1.3)
A 		1.3
(3)
A 		0.6
(-3)
A 		1
(0.4)
A 		1
C 1.8
(-2.7)
A 		1.7
(-2.7)
A 		9.9
(3)
A 		1.3
(-3)
A 		9
avr 1.4
(-3) 		1.4
(-3) 		4
(3) 		2.7
(0) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2
(0.8)
A 		1.3
(-1)
A 		0.5
(-3)
A 		2.1
(1)
A 		2.9
(3)
A 		2.4
(1.8)
A 		2
B 1.2
(-1.4)
A 		1.8
(1)
A 		1.1
(-1.8)
A 		0.8
(-3)
A 		2.3
(3)
A 		1.9
(1.4)
A 		2
C 1.4
(-1.6)
A 		2.1
(0.9)
A 		1
(-3)
A 		1
(-3)
A 		2.2
(1.2)
A 		2.7
(3)
A 		2
avr 1.5
(-0.8) 		1.7
(-0) 		0.9
(-3) 		1.3
(-1.5) 		2.5
(3) 		2.3
(2.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179128_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3214
Sequence Type Exemplar sequence
Representative Public ID F44F4.9 NCBI
Target Description F44F4.9 /REP_DB=WormBase Gene ID /WP=CE01004 /TR=Q20407 /GB=CAA85458.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063948(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063948 NCBI Caenorhabditis elegans F44F4.9 (F44F4.9) mRNA, complete cds. 11/11 None
F44F4.9 ENSEMBL cdna:known chromosome:CEL140:II:10915054:10915680:-1 gene:F44F4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037188 6/11 Cross Hyb Matching Probes None
GENEFINDER00000037202 6/11 Cross Hyb Matching Probes None
Y81G3A.2 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10915050-10915677(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44F4.9
Entrez Gene 185751 Entrez gene
SwissProt Q20407 EMBL-EBI
WormBase CE01004 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85458 Hypothetical protein F44F4.9 [Caenorhabditis elegans] ref|NP_496349.1| F44F4.9 [Caenorhabditis elegans] 6.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496349.1 1 35-57
F44F4.9 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:179128_AT
gcaaacgccgattatatgtcaggtatccaatttttaaattccttccaaaatatatacatt
cattcagtcaaggatactttggcaatgttcaccctttactcgactctggccatttttgta
atctcgacagtgatatttggcttatcattgtacagctttttgaagaatagaagacttcga
cagttcaagctctcggagccacaggtacatatctactacaaggacagagacgttaaacca
aagctcaaccggaaagttctagaagtcatggatcccgttccagtttcagtttctgttcct
gttccagtacaagcagtgctctcagttgcaccagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAACGCCGATTATATGTCAGGTA 370 317 22 Antisense
TTACTCGACTCTGGCCATTTTTGTA 433 683 117 Antisense
GGCCATTTTTGTAATCTCGACAGTG 561 543 129 Antisense
TATTTGGCTTATCATTGTACAGCTT 299 661 155 Antisense
AGACTTCGACAGTTCAAGCTCTCGG 59 73 193 Antisense
GCTCTCGGAGCCACAGGTACATATC 37 299 210 Antisense
GAGACGTTAAACCAAAGCTCAACCG 556 393 248 Antisense
AGAAGTCATGGATCCCGTTCCAGTT 180 73 282 Antisense
GTTCCAGTTTCAGTTTCTGTTCCTG 384 441 298 Antisense
TTCTGTTCCTGTTCCAGTACAAGCA 85 695 312 Antisense
AGCAGTGCTCTCAGTTGCACCAGTT 180 77 333 Antisense
Sequence Source Affymetrix Proprietary Database