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[179127_s_at]

Description C17G1.5 /REP_DB=WormBase Gene ID /WP=CE08284 /TR=Q93241 /GB=CAB01673.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 35      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 81      6grp_total > 36      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 919
1 2 3 4 range
A 347.7
(-2.2)
P 		260.6
(-2.8)
P 		235
(-3)
P 		1112
(3)
P 		877
B 368.9
(-2)
P 		211.4
(-3)
P 		235.4
(-2.8)
P 		1122.4
(3)
P 		911
C 389.3
(-2.1)
P 		384.9
(-2.2)
P 		263.6
(-3)
P 		1129.9
(3)
P 		866
avr 368.6
(-2.2) 		285.6
(-2.7) 		244.7
(-3) 		1121.4
(3) 		877

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 203.4
(-3)
P 		336.2
(3)
P 		335.6
(3)
P 		243.4
(-1.2)
P 		212.5
(-2.6)
P 		251.7
(-0.8)
P 		133
B 366.9
(3)
P 		357.7
(2.7)
P 		296.8
(0.4)
P 		206.4
(-3)
P 		332
(1.7)
P 		331.4
(1.7)
P 		161
C 361.8
(3)
P 		322.6
(1.2)
P 		229.3
(-3)
P 		241.6
(-2.4)
P 		281
(-0.7)
P 		336.3
(1.8)
P 		133
avr 310.7
(1.4) 		338.8
(3) 		287.2
(0.1) 		230.5
(-3) 		275.2
(-0.5) 		306.5
(1.2) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 126.6
(1)
P 		56.6
(-3)
P 		61.4
(-2.7)
P 		162.8
(3)
P 		106
B 117.6
(-0.9)
P 		52.2
(-3)
P 		54.5
(-2.9)
P 		239.2
(3)
P 		187
C 128.9
(-0.7)
P 		110.7
(-1.9)
P 		91.9
(-3)
P 		190.5
(3)
P 		99
avr 124.4
(-0.4) 		73.2
(-2.8) 		69.3
(-3) 		197.5
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 37.5
(-3)
P 		119.6
(3)
P 		73.1
(-0.4)
P 		61.7
(-1.2)
P 		64.1
(-1.1)
P 		61.3
(-1.3)
P 		82
B 127.7
(2.5)
P 		119.1
(1.8)
P 		72.1
(-1.7)
P 		54.7
(-3)
P 		134.9
(3)
P 		123.6
(2.2)
P 		80
C 134.1
(3)
P 		98.4
(0.5)
P 		58.4
(-2.3)
P 		48.6
(-3)
P 		90.9
(-0)
P 		112.6
(1.5)
P 		86
avr 99.8
(1.7) 		112.4
(3) 		67.9
(-1.7) 		55
(-3) 		96.6
(1.3) 		99.2
(1.6) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179127_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16698
Sequence Type Exemplar sequence
Representative Public ID C17G1.5 NCBI
Target Description C17G1.5 /REP_DB=WormBase Gene ID /WP=CE08284 /TR=Q93241 /GB=CAB01673.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077267(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077267 NCBI Caenorhabditis elegans C17G1.5 (C17G1.5) mRNA, complete cds. 10/11 None
GENEFINDER00000020428 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9941557:9944398:1 10/11 None
C17G1.5 ENSEMBL cdna:known chromosome:CEL140:X:9941560:9944703:1 gene:C17G1.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020422 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9941689-9944398(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17G1.5
Entrez Gene 181207 Entrez gene
SwissProt Q93241 EMBL-EBI
WormBase CE31416 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01673 Hypothetical protein C17G1.5 [Caenorhabditis elegans] ref|NP_509668.2| C17G1.5 [Caenorhabditis elegans] 1.0E-162
blast CAE58763 Hypothetical protein CBG01955 [Caenorhabditis briggsae] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:179127_S_AT
gtggcatgttaggagttcagttggatggtggagcttctgaatctgatgatcttcccaatg
aactgagaggtcctgtttcaacgtggaacaagaaaacttcaagaactcaaccaaaagagc
aaactcaagcattggctttgagatccaaaccaataaaattcttcgtagatgccgtaacca
atgattgctactccgcgaaaaacctgacaaggctgaaaaaacagaagtgttcctacaagt
attgtcaaacactttcaattttggatagaaatgcaggaaattcatttgttgtccgtggat
gtgctgaacattttggtgcaataaatgtgccagaattggaaaagaaaagcgatcattctt
gtgaaatgctgcatgaaaagttagaaatcaaagaatgtatttgcaaaacaagcaagtact
gtaacgctggatggaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCATGTTAGGAGTTCAGTTGGA 547 489 191 Antisense
GCTTCTGAATCTGATGATCTTCCCA 48 307 223 Antisense
CTTCCCAATGAACTGAGAGGTCCTG 686 217 241 Antisense
GAGAGGTCCTGTTTCAACGTGGAAC 242 393 255 Antisense
AAGAGCAAACTCAAGCATTGGCTTT 180 153 305 Antisense
ATTCTTCGTAGATGCCGTAACCAAT 182 3 348 Antisense
TAACCAATGATTGCTACTCCGCGAA 206 639 365 Antisense
GCTACTCCGCGAAAAACCTGACAAG 359 303 377 Antisense
GCAGGAAATTCATTTGTTGTCCGTG 546 311 463 Antisense
GTTGTCCGTGGATGTGCTGAACATT 132 437 478 Antisense
AGTACTGTAACGCTGGATGGACCAA 86 63 605 Antisense
Sequence Source Affymetrix Proprietary Database