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[179126_at]

Description ZK218.7 /REP_DB=WormBase Gene ID /WP=CE16707 /TR=O46001 /GB=CAB04987.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 46
(-0.4)
P 		23.1
(-3)
A 		28.7
(-2.4)
A 		75.1
(3)
A 		52
B 74
(2.2)
P 		78
(3)
A 		49.3
(-3)
A 		71.1
(1.6)
P 		29
C 56.2
(-0.8)
P 		54.5
(-3)
A 		56.2
(-0.8)
P 		59.2
(3)
A 		5
avr 58.7
(0.5) 		51.9
(-1.2) 		44.7
(-3) 		68.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 149.6
(3)
P 		21.1
(-3)
A 		45.2
(-1.9)
P 		54.7
(-1.4)
P 		41.7
(-2)
A 		49.4
(-1.7)
P 		129
B 94.8
(3)
P 		50.1
(-0.7)
P 		21.5
(-3)
A 		35.8
(-1.8)
A 		31.8
(-2.2)
A 		27.9
(-2.5)
A 		73
C 164.5
(3)
P 		4.4
(-3)
A 		51.2
(-1.2)
P 		113.8
(1.1)
P 		28.9
(-2.1)
A 		21.8
(-2.3)
P 		160
avr 136.3
(3) 		25.2
(-3) 		39.3
(-2.2) 		68.1
(-0.7) 		34.1
(-2.5) 		33
(-2.6) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.8
(3)
P 		5
(-3)
A 		7.5
(-1.7)
A 		11
(0.1)
A 		12
B 23.6
(3)
P 		19.3
(0.9)
A 		11.4
(-3)
A 		15.1
(-1.2)
P 		12
C 18.6
(2.4)
P 		15.7
(0.6)
A 		19.6
(3)
P 		10
(-3)
A 		10
avr 19.7
(3) 		13.3
(-2) 		12.8
(-2.4) 		12
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 27.6
(3)
P 		7.5
(-3)
A 		9.8
(-2.3)
P 		13.9
(-1.1)
P 		12.6
(-1.5)
A 		12
(-1.7)
P 		20
B 33
(3)
P 		16.7
(-0.5)
P 		5.2
(-3)
A 		9.5
(-2.1)
A 		12.9
(-1.3)
A 		10.4
(-1.9)
A 		28
C 61
(3)
P 		1.3
(-3)
A 		13
(-1.8)
P 		22.9
(-0.8)
P 		9.3
(-2.2)
A 		7.3
(-2.4)
P 		60
avr 40.5
(3) 		8.5
(-3) 		9.3
(-2.9) 		15.4
(-1.7) 		11.6
(-2.4) 		9.9
(-2.7) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179126_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13893
Sequence Type Exemplar sequence
Representative Public ID ZK218.7 NCBI
Target Description ZK218.7 /REP_DB=WormBase Gene ID /WP=CE16707 /TR=O46001 /GB=CAB04987.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074934 NCBI Caenorhabditis elegans ZK218.7 (ZK218.7) mRNA, complete cds. 11/11 None
SNAP00000041065 ENSEMBL cdna:SNAP chromosome:CEL140:V:17108361:17109234:1 11/11 None
GENEFINDER00000041075 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17108361:17109234:1 11/11 None
ZK218.7 ENSEMBL cdna:known chromosome:CEL140:V:17108361:17109234:1 gene:ZK218.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17108360-17109234(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK218.7
Entrez Gene 191247 Entrez gene
SwissProt O46001 EMBL-EBI
WormBase CE16707 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04987 Hypothetical protein ZK218.7 [Caenorhabditis elegans] ref|NP_507335.1| ZK218.7 [Caenorhabditis elegans] 1.0E-141
blast CAB04982 Hypothetical protein ZK218.3 [Caenorhabditis elegans] ref|NP_507331.1| ZK218.3 [Caenorhabditis elegans] 1.0E-107
blast CAB04990 Hypothetical protein ZK218.11 [Caenorhabditis elegans] ref|NP_507336.1| ZK218.11 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 13.0
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.7E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.5E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.4E-13
Sequence
Target Sequence 
>C. ELEGANS:179126_AT
caactcctattctgactctacatgtgcaactctctacgctatcaccgacactgagccagc
accagtgccaggagttaacacacttcgcccattgaaatgcttcaccgccggaacagatgg
taccggtgcagtagatccagatcttgtaagagctgcagtcagtacatgtccaaagacttg
tggactttgttgtcaaagtgcggattacaagtgtcccaatgttcagttcccacgtctcaa
ctgtgccacaattcttccatcacaatgcagagaccaacaatggcgcgtcatcattgctca
agattgtccgtctgcttgtggattctgtaatcaaggaggatgtgttgatgcagtcattga
atgttctaatgatatctccatttgcaatgccgtcggtatgcaagactttgtaaatctaaa
ctgccaaaaaacatgtggaagatgttcaacatccacaacggctgctggctcagtcgcaac
agcttcaagtggaacatgtacaacctacaacgctgactcaaatcgatcttgtgcggcttg
ggctgctaatggcttctgtcaaaacaccttctactcaattgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTCCTATTCTGACTCTACATGT 69 189 168 Antisense
GTTAACACACTTCGCCCATTGAAAT 19 447 241 Antisense
AGCTGCAGTCAGTACATGTCCAAAG 469 81 318 Antisense
ACAAGTGTCCCAATGTTCAGTTCCC 143 115 374 Antisense
TGTGCCACAATTCTTCCATCACAAT 691 555 409 Antisense
AGATTGTCCGTCTGCTTGTGGATTC 447 65 468 Antisense
TGATATCTCCATTTGCAATGCCGTC 665 563 537 Antisense
TGCTGGCTCAGTCGCAACAGCTTCA 519 581 630 Antisense
AAATCGATCTTGTGCGGCTTGGGCT 124 119 687 Antisense
CTTGGGCTGCTAATGGCTTCTGTCA 9 219 704 Antisense
CAAAACACCTTCTACTCAATTGCCC 469 191 727 Antisense
Sequence Source Affymetrix Proprietary Database