[Home] | [Total List]

[179125_at]

Description F13E9.9 /REP_DB=WormBase Gene ID /WP=CE05611 /TR=Q19413 /GB=CAA93411.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 04      6grp_total > 35      4grp_total > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 5
(-3)
A 		18.8
(-1.2)
P 		39.8
(1.4)
A 		52
(3)
A 		47
B 54.5
(3)
P 		23.9
(-1.3)
A 		33.9
(0.1)
P 		11.8
(-3)
A 		43
C 19.6
(-2)
A 		36.7
(-1.1)
A 		1.2
(-3)
A 		112.9
(3)
P 		112
avr 26.4
(-2.8) 		26.5
(-2.7) 		25
(-3) 		58.9
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 30.1
(1.4)
A 		22.7
(0.1)
A 		39
(3)
A 		14.3
(-1.4)
A 		5
(-3)
A 		15.9
(-1.1)
A 		34
B 33.9
(0.7)
P 		41.5
(3)
P 		26.8
(-1.4)
A 		23.5
(-2.3)
A 		21.3
(-3)
A 		29.4
(-0.6)
P 		20
C 12.3
(-1.6)
A 		36.4
(3)
A 		5.3
(-3)
A 		12.7
(-1.6)
A 		18.2
(-0.5)
A 		15.6
(-1)
A 		31
avr 25.4
(0.4) 		33.5
(3) 		23.7
(-0.1) 		16.8
(-2.4) 		14.8
(-3) 		20.3
(-1.2) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.8
(-3)
A 		4.1
(-1.4)
P 		10.4
(3)
A 		7.6
(1)
A 		9
B 17.4
(3)
P 		5.9
(-1.6)
A 		7.9
(-0.8)
P 		2.5
(-3)
A 		15
C 6.5
(-1)
A 		10.5
(0.3)
A 		0.4
(-3)
A 		19
(3)
P 		19
avr 8.6
(1.1) 		6.8
(-2) 		6.2
(-3) 		9.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.5
(0.4)
A 		8.1
(2.7)
A 		8.5
(3)
A 		3.6
(-1.2)
A 		1.5
(-3)
A 		3.9
(-0.9)
A 		7
B 11.8
(1.4)
P 		13.8
(3)
P 		6.5
(-2.8)
A 		6.2
(-3)
A 		8.6
(-1.1)
A 		11
(0.8)
P 		8
C 4.6
(-1)
A 		11.1
(3)
A 		1.4
(-3)
A 		2.6
(-2.3)
A 		5.9
(-0.2)
A 		5.2
(-0.6)
A 		10
avr 7.3
(-0.2) 		11
(3) 		5.5
(-1.8) 		4.1
(-3) 		5.3
(-2) 		6.7
(-0.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179125_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8554
Sequence Type Exemplar sequence
Representative Public ID F13E9.9 NCBI
Target Description F13E9.9 /REP_DB=WormBase Gene ID /WP=CE05611 /TR=Q19413 /GB=CAA93411.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069624(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069624 NCBI Caenorhabditis elegans F13E9.9 (F13E9.9) mRNA, complete cds. 10/11 None
SNAP00000017051 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10897625:10899150:-1 10/11 None
F13E9.9 ENSEMBL cdna:known chromosome:CEL140:IV:10897625:10899150:-1 gene:F13E9.9 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017056 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10897630-10899156(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13E9.9
Entrez Gene 184427 Entrez gene
SwissProt Q19413 EMBL-EBI
WormBase CE35473 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93411 Hypothetical protein F13E9.9 [Caenorhabditis elegans] ref|NP_502025.2| F13E9.9 [Caenorhabditis elegans] 1.0E-136
Sequence
Target Sequence 
>C. ELEGANS:179125_AT
tttccatattcagatggttccgtgaagaacgatgacaacgagaagccccaatcttcagaa
tcaaatgaaaattctgatgtctcttcaaaatcccgatctgacagtgattactacaaaaat
ggaaagaaaaagggtttcttgggaaaattaattgggaaagtgacggataaactgaagacg
atcccaagaaaattcgcagctggtgcagctcttctcacaggaaaagtagtgtctggagct
gcaagcattcctgagaaagtggttgatggagtgaagagtattcctggaaaagcaaagagc
attcttccaggtggaaaaaagaagaacggagatattacattaaatgattatacacaggat
tcttctccacaggaaaatcatttgcatgttcatagagataggcattatcatgatgagaga
catgcacatcaagatgacagtcaacaattcagtgtttataatgattgggatggatttggt
tctaatagaagaaattatccagttatttatgatggattccgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCATATTCAGATGGTTCCGTGA 487 667 547 Antisense
GAACGATGACAACGAGAAGCCCCAA 39 349 573 Antisense
GAGAAGCCCCAATCTTCAGAATCAA 17 391 586 Antisense
GATGTCTCTTCAAAATCCCGATCTG 535 409 622 Antisense
ATCCCGATCTGACAGTGATTACTAC 128 39 636 Antisense
AATTCGCAGCTGGTGCAGCTCTTCT 174 177 737 Antisense
AAGTAGTGTCTGGAGCTGCAAGCAT 166 155 770 Antisense
GAGCTGCAAGCATTCCTGAGAAAGT 354 387 782 Antisense
AGCAAAGAGCATTCTTCCAGGTGGA 698 75 837 Antisense
ACAGGATTCTTCTCCACAGGAAAAT 255 105 900 Antisense
CAGTTATTTATGATGGATTCCGTTC 699 205 1046 Antisense
Sequence Source Affymetrix Proprietary Database