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[179124_at]

Description F55G7.3 /REP_DB=WormBase Gene ID /WP=CE03425 /TR=Q20857 /GB=CAA90611.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 39      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7.2
(3)
A 		6
(0.3)
A 		4.5
(-3)
A 		6.4
(1.2)
A 		3
B 25.5
(3)
A 		3.6
(-3)
A 		4.4
(-2.8)
A 		6.9
(-2.1)
A 		22
C 6.7
(-0.9)
A 		6.6
(-1)
A 		4.5
(-3)
A 		10.7
(3)
A 		6
avr 13.1
(3) 		5.4
(-2.4) 		4.5
(-3) 		8
(-0.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 5.4
(-2.4)
A 		8.8
(-1.8)
A 		2.2
(-3)
A 		3.6
(-2.7)
A 		35.2
(3)
A 		6.8
(-2.2)
A 		33
B 14.7
(3)
A 		5.9
(-1.5)
A 		4.3
(-2.3)
A 		5.7
(-1.6)
A 		5.5
(-1.7)
A 		3
(-3)
A 		12
C 2.7
(-3)
A 		13.2
(3)
A 		8.2
(0.1)
A 		5.2
(-1.6)
A 		8.2
(0.1)
A 		3.2
(-2.7)
A 		11
avr 7.6
(-1.4) 		9.3
(-0.5) 		4.9
(-2.7) 		4.8
(-2.8) 		16.3
(3) 		4.3
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.6
(3)
A 		1.3
(-1.6)
A 		1.2
(-1.9)
A 		0.9
(-3)
A 		2
B 8.1
(3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		1.5
(-2.5)
A 		7
C 2.2
(3)
A 		1.9
(-0)
A 		1.6
(-3)
A 		1.8
(-1)
A 		1
avr 4.3
(3) 		1.4
(-2.8) 		1.3
(-3) 		1.4
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1
(-2.7)
A 		3.1
(-1.5)
A 		0.5
(-3)
A 		0.9
(-2.8)
A 		10.6
(3)
A 		1.6
(-2.3)
A 		10
B 5.1
(3)
A 		2
(-1.5)
A 		1
(-3)
A 		1.5
(-2.3)
A 		2.3
(-1.1)
A 		1.1
(-2.9)
A 		4
C 1
(-3)
A 		4
(3)
A 		2.1
(-0.8)
A 		1
(-3)
A 		2.7
(0.4)
A 		1.1
(-2.8)
A 		3
avr 2.4
(-1.1) 		3
(-0.2) 		1.2
(-2.9) 		1.1
(-3) 		5.2
(3) 		1.3
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16523
Sequence Type Exemplar sequence
Representative Public ID F55G7.3 NCBI
Target Description F55G7.3 /REP_DB=WormBase Gene ID /WP=CE03425 /TR=Q20857 /GB=CAA90611.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077597(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077597 NCBI Caenorhabditis elegans F55G7.3 (F55G7.3) mRNA, complete cds. 11/11 None
SNAP00000016063 ENSEMBL cdna:SNAP chromosome:CEL140:X:11940257:11941972:-1 11/11 None
F55G7.3 ENSEMBL cdna:known chromosome:CEL140:X:11940257:11941972:-1 gene:F55G7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11940256-11941972(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G7.3
Entrez Gene 186333 Entrez gene
SwissProt Q20857 EMBL-EBI
WormBase CE03425 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90611 Hypothetical protein F55G7.3 [Caenorhabditis elegans] ref|NP_509998.1| F55G7.3 [Caenorhabditis elegans] 1.0E-108
blast CAA90611 Hypothetical protein F55G7.3 [Caenorhabditis elegans] ref|NP_509998.1| F55G7.3 [Caenorhabditis elegans] 6.0E-89
Sequence
Target Sequence 
>C. ELEGANS:179124_AT
gatgaatcatccgacgactcgtacgatcccagttacaatccaaagctagggagcggattt
ttatctgtcactaaaattagtgagaaaatgagaaaatcgcaattaaaagagcgtcgactc
aggaagcaatccaaagtatcaaaatgtgcaaagaaactcaagagaaaggtgccaaccaga
caaatcgttacaaataaaccagaaaatctatataaagaacatcgtcagggtccaaataca
agaagcaatgagttgtcaaatcaggaaagccttccaatcgtgggaacttacagccaaaat
atgagcgagaccactgtggagcccttatttcaagcatccaaggatttgcatattgacgct
tccgatggtaaactcaactgtaaaaatatttttcacaagatagattgttcagcaatggac
acaaacgaagacatgtctacttttgccagcgaagaaatcaacgtaactttaggatcagat
gaagagaaaaaacaaaatagtactgtaaataaagttatattctctccggccataatgcca
cctgaacaccctaccagtgttgtaataccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAATCATCCGACGACTCGTACG 393 411 43 Antisense
GACTCGTACGATCCCAGTTACAATC 552 373 58 Antisense
GGGAGCGGATTTTTATCTGTCACTA 335 495 91 Antisense
AAAGAACATCGTCAGGGTCCAAATA 106 123 256 Antisense
GAAAGCCTTCCAATCGTGGGAACTT 620 357 307 Antisense
TGAGCGAGACCACTGTGGAGCCCTT 522 569 344 Antisense
GGAGCCCTTATTTCAAGCATCCAAG 94 521 360 Antisense
GATTTGCATATTGACGCTTCCGATG 404 427 385 Antisense
GAAGACATGTCTACTTTTGCCAGCG 72 341 469 Antisense
ATAAAGTTATATTCTCTCCGGCCAT 284 25 551 Antisense
CACCCTACCAGTGTTGTAATACCGC 575 199 589 Antisense
Sequence Source Affymetrix Proprietary Database