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[179123_at] F-box protein

Description B0391.5 /REP_DB=WormBase Gene ID /WP=CE24769 /TR=O62012 /GB=CAB03799.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 27      6grp_total > 17      4grp_total > 38      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 241.7
(3)
P 		95.3
(-1.5)
P 		45.6
(-3)
A 		83.4
(-1.8)
A 		196
B 253.9
(3)
P 		79.1
(-1.4)
P 		16.7
(-3)
A 		79
(-1.4)
A 		237
C 250.4
(3)
P 		110.1
(-0.5)
P 		6.7
(-3)
A 		44.9
(-2.1)
A 		244
avr 248.7
(3) 		94.8
(-1.1) 		23
(-3) 		69.1
(-1.8) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 223
(3)
P 		108.9
(-2)
P 		136.8
(-0.8)
P 		86.2
(-3)
P 		91.6
(-2.8)
P 		98.7
(-2.5)
P 		137
B 188.9
(3)
P 		136.2
(0.2)
P 		99.3
(-1.7)
P 		74.4
(-3)
P 		76.9
(-2.9)
A 		101.8
(-1.6)
P 		115
C 179.2
(3)
P 		156.6
(1.6)
P 		123.9
(-0.4)
P 		95.1
(-2.2)
P 		81.3
(-3)
P 		126
(-0.3)
P 		98
avr 197
(3) 		133.9
(-0.3) 		120
(-1.1) 		85.2
(-2.9) 		83.3
(-3) 		108.8
(-1.7) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 88
(3)
P 		20.7
(-2.3)
P 		11.9
(-3)
A 		12.2
(-3)
A 		76
B 81
(3)
P 		19.5
(-1.8)
P 		3.9
(-3)
A 		16.8
(-2)
A 		77
C 82.9
(3)
P 		31.7
(-0.8)
P 		2.3
(-3)
A 		7.6
(-2.6)
A 		81
avr 84
(3) 		24
(-1.6) 		6
(-3) 		12.2
(-2.5) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 41.1
(3)
P 		38.7
(2.3)
P 		29.8
(-0.5)
P 		21.9
(-3)
P 		27.6
(-1.2)
P 		24
(-2.3)
P 		19
B 65.7
(3)
P 		45.3
(0.3)
P 		24.1
(-2.4)
P 		19.7
(-3)
P 		31.3
(-1.5)
A 		38
(-0.6)
P 		46
C 66.4
(3)
P 		47.8
(0.6)
P 		31.5
(-1.4)
P 		19.1
(-3)
P 		26.3
(-2.1)
P 		42.2
(-0.1)
P 		47
avr 57.7
(3) 		43.9
(0.8) 		28.5
(-1.7) 		20.2
(-3) 		28.4
(-1.7) 		34.7
(-0.7) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12953
Sequence Type Exemplar sequence
Representative Public ID B0391.5 NCBI
Target Description B0391.5 /REP_DB=WormBase Gene ID /WP=CE24769 /TR=O62012 /GB=CAB03799.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074480 NCBI Caenorhabditis elegans B0391.5 (B0391.5) mRNA, complete cds. 11/11 None
GENEFINDER00000015413 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15602984:15609674:-1 11/11 None
B0391.5 ENSEMBL cdna:known chromosome:CEL140:V:15608314:15612964:-1 gene:B0391.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015401 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15608313-15612964(-) 100.0 100.0
Public Domain and Genome References
Gene Title F-box protein
Ensembl B0391.5
Entrez Gene 181950 Entrez gene
SwissProt O62012 EMBL-EBI
WormBase CE24769 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03799 Hypothetical protein B0391.5 [Caenorhabditis elegans] ref|NP_506881.1| B0391.5 [Caenorhabditis elegans] 0.0
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 0.0
blast AAK39365 Hypothetical protein Y73B3A.15 [Caenorhabditis elegans] ref|NP_508071.1| Y73B3A.15 [Caenorhabditis elegans] 0.0
blast CAD89725 Hypothetical protein B0391.6 [Caenorhabditis elegans] ref|NP_001021351.1| B0391.6 [Caenorhabditis elegans] 0.0
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 1.0E-166
blast CAB76407 Hypothetical protein B0391.11 [Caenorhabditis elegans] ref|NP_506878.1| B0391.11 [Caenorhabditis elegans] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-31
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.9E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-31
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:179123_AT
agcatccgaaacttcaactcaacagtttcgcgatcacattttcaagtgcccttgagcaag
acgcccggaagaaggtgatcgagacttttcattcttggaaatggccgagaatcagaaact
tcacgtttaacggaattcaccaatcggaaattaagaccactttaggttgcctcaattcgg
aagcaatccagacgatttcactagatgtttctcgagtttcagaagattttgtgatgaata
caggtgtctatagtttggaacaatggaaaagggcaaaatcgatttcaatttgtggtgact
gcaaactttcgattccttttgcaaatttggctcatttggcgggattcgagatatcactaa
agtccttcacaagagaatatgcagtggaaattaagaattatctcgacaactttccaaaca
aaatacaatcgggaacttttcgaagcatcatcacggaccccatcgaaatcgggaaggtct
tcaacccagattatgcacttggctccgaaaactcactggattacaatacatcaaatttct
gttatactatccaatgcggtccttacagttttcgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCATCCGAAACTTCAACTCAACAG 119 79 530 Antisense
AACTCAACAGTTTCGCGATCACATT 326 141 545 Antisense
TCAAGTGCCCTTGAGCAAGACGCCC 367 631 571 Antisense
GACCACTTTAGGTTGCCTCAATTCG 681 381 684 Antisense
GTGACTGCAAACTTTCGATTCCTTT 342 483 824 Antisense
CTTTTCGAAGCATCATCACGGACCC 3 223 965 Antisense
ATCACGGACCCCATCGAAATCGGGA 33 27 979 Antisense
ATCGGGAAGGTCTTCAACCCAGATT 431 35 997 Antisense
ATGCACTTGGCTCCGAAAACTCACT 702 41 1022 Antisense
TCTGTTATACTATCCAATGCGGTCC 526 607 1067 Antisense
AATGCGGTCCTTACAGTTTTCGAAT 40 167 1082 Antisense
Sequence Source Affymetrix Proprietary Database