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[179121_at]

Description T03F7.6 /REP_DB=WormBase Gene ID /WP=CE06349 /TR=Q22118 /GB=CAA98521.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 21.4
(-1.7)
A 		8.4
(-2.7)
A 		5.1
(-3)
A 		79.7
(3)
P 		75
B 49
(1.3)
A 		47.8
(1.1)
A 		19.6
(-3)
A 		61
(3)
A 		41
C 32.9
(-1.7)
A 		25.6
(-2)
A 		5.3
(-3)
A 		130.2
(3)
P 		125
avr 34.4
(-1.2) 		27.3
(-1.7) 		10
(-3) 		90.3
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 31.5
(-0.3)
A 		5.1
(-2.9)
A 		65
(3)
A 		4.3
(-3)
A 		33.8
(-0.1)
A 		9.3
(-2.5)
A 		61
B 17.8
(-1.8)
A 		45
(1)
A 		41.8
(0.6)
A 		6.7
(-3)
A 		64.5
(3)
A 		6.9
(-3)
A 		58
C 19.5
(-1.8)
A 		76.6
(3)
A 		12.9
(-2.4)
A 		5.9
(-3)
A 		23.7
(-1.5)
A 		5.5
(-3)
A 		71
avr 22.9
(-0.2) 		42.2
(3) 		39.9
(2.6) 		5.6
(-3) 		40.7
(2.8) 		7.2
(-2.7) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 7.8
(0.8)
A 		1.8
(-2.7)
A 		1.3
(-3)
A 		11.7
(3)
P 		10
B 15.6
(3)
A 		11.8
(0.9)
A 		4.5
(-3)
A 		13
(1.6)
A 		11
C 10.9
(-0.3)
A 		7.3
(-1.4)
A 		1.8
(-3)
A 		22
(3)
P 		20
avr 11.4
(1.1) 		7
(-0.9) 		2.5
(-3) 		15.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.8
(-0.8)
A 		1.8
(-2.7)
A 		14.1
(3)
A 		1.1
(-3)
A 		10.2
(1.2)
A 		2.3
(-2.4)
A 		13
B 6.2
(-1.9)
A 		15
(0.2)
A 		10.2
(-0.9)
A 		1.8
(-3)
A 		26.2
(3)
A 		2.6
(-2.8)
A 		24
C 7.2
(-1.4)
A 		23.4
(3)
A 		3.3
(-2.4)
A 		1.2
(-3)
A 		7.7
(-1.2)
A 		1.8
(-2.8)
A 		22
avr 6.4
(-0.7) 		13.4
(2.4) 		9.2
(0.5) 		1.4
(-3) 		14.7
(3) 		2.2
(-2.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12962
Sequence Type Exemplar sequence
Representative Public ID T03F7.6 NCBI
Target Description T03F7.6 /REP_DB=WormBase Gene ID /WP=CE06349 /TR=Q22118 /GB=CAA98521.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073467 NCBI Caenorhabditis elegans T03F7.6 (T03F7.6) mRNA, complete cds. 11/11 None
GENEFINDER00000015856 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11297447:11299065:1 9/11 None
T03F7.6 ENSEMBL cdna:known chromosome:CEL140:V:11297516:11299150:1 gene:T03F7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11297515-11299150(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03F7.6
Entrez Gene 188028 Entrez gene
SwissProt Q22118 EMBL-EBI
WormBase CE06349 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98521 Hypothetical protein T03F7.6 [Caenorhabditis elegans] ref|NP_505868.1| T03F7.6 [Caenorhabditis elegans] 1.0E-126
blast CAA98521 Hypothetical protein T03F7.6 [Caenorhabditis elegans] ref|NP_505868.1| T03F7.6 [Caenorhabditis elegans] 5.0E-77
blast CAE75212 Hypothetical protein CBG23161 [Caenorhabditis briggsae] 1.0E-75
blast CAE75212 Hypothetical protein CBG23161 [Caenorhabditis briggsae] 2.0E-69
blast CAB03820 Hypothetical protein C03E10.1 [Caenorhabditis elegans] ref|NP_505867.1| C03E10.1 [Caenorhabditis elegans] 5.0E-45
blast CAE75211 Hypothetical protein CBG23160 [Caenorhabditis briggsae] 3.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505868.1 4 31-53,57-76,136-158,162-184
T03F7.6 4 31-53,57-76,136-158,162-184
GENEFINDER00000015856 6 5-27,42-64,85-104,114-136,176-198,202-224
Sequence
Target Sequence 
>C. ELEGANS:179121_AT
cgttgttaaatccatgttctccgtaatattctccacaatatttgtatctattctctactt
gatttcttttatcgtaagaaatacaaaaaaaaagatttttcatcaaacccgttttcagct
tgtcatgtatctgttctgtgctgcaaaaagacgatattacgaaacccttggaattgtgtc
attgactagaagatacttgttatcagaaagttttgaactctgtcgaagctcattgccagc
cacaatttgttgccttgctatcaatatttcattattcctttctttttggtgtttaatatt
cggaatcatacctttcatttatttgagcgaatattttgtacttgcaaatacaacacttaa
cttaaccgcaactgttttccccattcttttcctggctggctcaacaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTGTTAAATCCATGTTCTCCGTA 384 247 165 Antisense
TGTTCTCCGTAATATTCTCCACAAT 204 561 179 Antisense
GTATCTATTCTCTACTTGATTTCTT 254 455 208 Antisense
ATCAAACCCGTTTTCAGCTTGTCAT 529 27 266 Antisense
GCTTGTCATGTATCTGTTCTGTGCT 376 307 282 Antisense
GAAACCCTTGGAATTGTGTCATTGA 144 359 325 Antisense
AACTCTGTCGAAGCTCATTGCCAGC 433 141 380 Antisense
GCCAGCCACAATTTGTTGCCTTGCT 126 281 399 Antisense
TCATTATTCCTTTCTTTTTGGTGTT 323 619 433 Antisense
ATTCGGAATCATACCTTTCATTTAT 275 9 462 Antisense
CTTTTCCTGGCTGGCTCAACAAAAA 189 223 550 Antisense
Sequence Source Affymetrix Proprietary Database