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[179120_s_at]

Description F49E2.2 /REP_DB=WormBase Gene ID /WP=CE23752 /TR=Q20621 /GB=CAA86421.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 13      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 31      6grp_total > 13      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1488
1 2 3 4 range
A 1939.8
(3)
P 		1087.2
(-1.2)
P 		951.1
(-1.9)
P 		716.8
(-3)
P 		1223
B 1895.5
(3)
P 		1039.2
(-0.6)
P 		965.1
(-1)
P 		484.8
(-3)
P 		1411
C 1973.2
(3)
P 		1068
(-1.2)
P 		994
(-1.5)
P 		676.4
(-3)
P 		1297
avr 1936.2
(3) 		1064.8
(-1) 		970.1
(-1.4) 		626
(-3) 		1310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 920
1 2 3 4 5 6 range
A 1097
(1.6)
P 		1259
(3)
P 		968.4
(0.4)
P 		860.3
(-0.5)
P 		690.2
(-2)
P 		577.2
(-3)
P 		682
B 1364.3
(3)
P 		1085.1
(1)
P 		768.5
(-1.2)
P 		981.8
(0.3)
P 		652.6
(-2.1)
P 		523.1
(-3)
P 		841
C 1275.9
(3)
P 		1139.4
(2)
P 		1161.4
(2.2)
P 		728.8
(-0.9)
P 		661.5
(-1.4)
P 		444.5
(-3)
P 		831
avr 1245.7
(3) 		1161.2
(2.3) 		966.1
(0.7) 		857
(-0.2) 		668.1
(-1.7) 		514.9
(-3) 		731
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 603
1 2 3 4 range
A 706.3
(3)
P 		236
(-1.7)
P 		248.6
(-1.6)
P 		104.9
(-3)
P 		601
B 604.5
(3)
P 		256.7
(-1.2)
P 		223.6
(-1.6)
P 		103.3
(-3)
P 		501
C 653.2
(3)
P 		307.1
(-0.9)
P 		346.4
(-0.4)
P 		114.1
(-3)
P 		539
avr 654.7
(3) 		266.6
(-1.3) 		272.9
(-1.2) 		107.4
(-3) 		547

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 202.2
(-1.8)
P 		447.8
(3)
P 		210.9
(-1.6)
P 		218.2
(-1.5)
P 		208.3
(-1.7)
P 		140.5
(-3)
P 		307
B 474.7
(3)
P 		361.2
(0.6)
P 		186.6
(-3)
P 		260
(-1.5)
P 		265.1
(-1.4)
P 		195.1
(-2.8)
P 		288
C 472.9
(3)
P 		347.7
(0.7)
P 		295.6
(-0.3)
P 		146.6
(-3)
P 		214.1
(-1.8)
P 		148.8
(-3)
P 		326
avr 383.3
(2.9) 		385.6
(3) 		231
(-1.1) 		208.3
(-1.7) 		229.2
(-1.2) 		161.5
(-3) 		224
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179120_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16589
Sequence Type Exemplar sequence
Representative Public ID F49E2.2 NCBI
Target Description F49E2.2 /REP_DB=WormBase Gene ID /WP=CE23752 /TR=Q20621 /GB=CAA86421.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171755(11), NM_171969(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171755 NCBI Caenorhabditis elegans F49E2.2a (F49E2.2) mRNA, complete cds. 11/11 None
NM_171969 NCBI Caenorhabditis elegans F49E2.2b (F49E2.2) mRNA, complete cds. 10/11 None
GENEFINDER00000006383 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9567228:9573377:1 11/11 None
SNAP00000006381 ENSEMBL cdna:SNAP chromosome:CEL140:X:9569340:9573377:1 11/11 None
F49E2.2a.2 ENSEMBL cdna:known chromosome:CEL140:X:9567253:9573655:1 gene:F49E2.2 11/11 A 
F49E2.2a.3 ENSEMBL cdna:known chromosome:CEL140:X:9569305:9573631:1 gene:F49E2.2 11/11 None
F49E2.2a.1 ENSEMBL cdna:known chromosome:CEL140:X:9569311:9573655:1 gene:F49E2.2 11/11 A 
F49E2.2b ENSEMBL cdna:known chromosome:CEL140:X:9569340:9573583:1 gene:F49E2.2 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9567227-9573377(+) 100.0 100.0
Public Domain and Genome References
Ensembl F49E2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86421 Hypothetical protein F49E2.2a [Caenorhabditis elegans] ref|NP_741876.1| F49E2.2a [Caenorhabditis elegans] 0.0
blast CAD45594 Hypothetical protein F49E2.2b [Caenorhabditis elegans] ref|NP_741877.1| F49E2.2b [Caenorhabditis elegans] 0.0
blast CAE69792 Hypothetical protein CBG16083 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain 9.89999961853027
Pfam IPR001452 EMBL-EBI SH3 1.3E-6
Pfam IPR001452 EMBL-EBI SH3 1.3E-6
Pfam IPR001452 EMBL-EBI SH3 1.3E-6
Pfam IPR001452 EMBL-EBI SH3 1.3E-6
Sequence
Target Sequence 
>C. ELEGANS:179120_S_AT
ccaggaggagagcacatacgcccctcgtcataatgttgtcgccgagcaagtgcctcaaca
gccggttaatagcgctccaggtggtgtccgccgtgctggaaacacaattccaggtgctgt
taatgttttcggatttgcaaatcaatcaaatcctcagccaaatgtccgctacacgcctgt
tcagaatagcacgccttatcaagttgttaccagcgattatattcgcgttgggagagtcgt
cgataatccagtgacagaggagcaaatgaatgctaaaaaattccacgtggattctagtta
ccttccaatggctgctccatctcaccaagcacaacaacacagtcgcaatcatagtacaga
tatttcggttccatcattcttcaacccatcacaatatggaagtattctgattgttaacga
tgatttcaatgcttcttccggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGGAGGAGAGCACATACGCCCCT 103 271 1173 Antisense
CCCCTCGTCATAATGTTGTCGCCGA 127 261 1193 Antisense
AGTGCCTCAACAGCCGGTTAATAGC 389 59 1221 Antisense
TAATAGCGCTCCAGGTGGTGTCCGC 552 635 1239 Antisense
TGTCCGCCGTGCTGGAAACACAATT 166 557 1257 Antisense
CAAATCCTCAGCCAAATGTCCGCTA 641 193 1319 Antisense
AGCACGCCTTATCAAGTTGTTACCA 101 77 1360 Antisense
TTCTAGTTACCTTCCAATGGCTGCT 108 691 1464 Antisense
GATATTTCGGTTCCATCATTCTTCA 216 427 1531 Antisense
ATCATTCTTCAACCCATCACAATAT 351 31 1545 Antisense
ATGATTTCAATGCTTCTTCCGGAGA 117 47 1592 Antisense
Sequence Source Affymetrix Proprietary Database