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[179119_at]

Description B0001.6 /REP_DB=WormBase Gene ID /WP=CE05144 /TR=Q17415 /GB=CAA93455.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 45      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 67      6grp_total > 36      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5230
1 2 3 4 range
A 2445.7
(-1.1)
P 		824.3
(-3)
P 		880.6
(-2.9)
P 		6042.1
(3)
P 		5218
B 2590.4
(-0.8)
P 		864.2
(-2.9)
P 		812.1
(-3)
P 		5604
(3)
P 		4792
C 2460
(-1.1)
P 		1007.1
(-3)
P 		1161
(-2.8)
P 		5567.7
(3)
P 		4561
avr 2498.7
(-1) 		898.5
(-3) 		951.2
(-2.9) 		5737.9
(3) 		4839

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1070
1 2 3 4 5 6 range
A 2115.8
(3)
P 		1943.5
(1.3)
P 		1517.3
(-3)
P 		1780.2
(-0.4)
P 		1672.8
(-1.4)
P 		1737.4
(-0.8)
P 		599
B 2152.7
(3)
P 		1614.1
(-1.6)
P 		1544.1
(-2.2)
P 		1925.6
(1)
P 		1456.6
(-3)
P 		1846.2
(0.4)
P 		696
C 1468.7
(-1)
P 		2054.3
(2.3)
P 		2075.2
(2.4)
P 		2183.5
(3)
P 		1113.9
(-3)
P 		1498.6
(-0.8)
P 		1070
avr 1912.4
(2.4) 		1870.6
(2) 		1712.2
(0.3) 		1963.1
(3) 		1414.4
(-3) 		1694.1
(0.1) 		549
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1015
1 2 3 4 range
A 890.5
(3)
P 		178.9
(-3)
P 		230.2
(-2.6)
P 		884.4
(2.9)
P 		712
B 826
(0.8)
P 		213.4
(-2.8)
P 		188.2
(-3)
P 		1194.2
(3)
P 		1006
C 814.3
(1.8)
P 		289.6
(-3)
P 		404.6
(-1.9)
P 		938.8
(3)
P 		649
avr 843.6
(1.7) 		227.3
(-3) 		274.3
(-2.6) 		1005.8
(3) 		779

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 390
(-2)
P 		691.2
(3)
P 		330.4
(-3)
P 		451.5
(-1)
P 		504.8
(-0.1)
P 		423
(-1.5)
P 		361
B 749
(3)
P 		537.3
(-0.4)
P 		374.9
(-3)
P 		510
(-0.8)
P 		591.8
(0.5)
P 		688.4
(2)
P 		374
C 544.4
(1.1)
P 		626.8
(3)
P 		528.2
(0.8)
P 		439.1
(-1.2)
P 		360.4
(-3)
P 		501.7
(0.2)
P 		266
avr 561.1
(1.3) 		618.4
(3) 		411.2
(-3) 		466.9
(-1.4) 		485.7
(-0.8) 		537.7
(0.7) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8520
Sequence Type Exemplar sequence
Representative Public ID B0001.6 NCBI
Target Description B0001.6 /REP_DB=WormBase Gene ID /WP=CE05144 /TR=Q17415 /GB=CAA93455.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069909 NCBI Caenorhabditis elegans B0001.6 (B0001.6) mRNA, complete cds. 11/11 None
SNAP00000035715 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12159451:12164078:1 11/11 None
GENEFINDER00000035718 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12159451:12164078:1 10/11 None
B0001.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:12156809:12164231:1 gene:B0001.6 11/11 None
B0001.6.3 ENSEMBL cdna:known chromosome:CEL140:IV:12159439:12164231:1 gene:B0001.6 11/11 None
B0001.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:12159441:12164231:1 gene:B0001.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12159456-12164084(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0001.6
Entrez Gene 178166 Entrez gene
SwissProt Q17415 EMBL-EBI
WormBase CE31863 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93455 Hypothetical protein B0001.6 [Caenorhabditis elegans] ref|NP_502310.2| B0001.6 [Caenorhabditis elegans] 0.0
blast CAE62194 Hypothetical protein CBG06242 [Caenorhabditis briggsae] 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:179119_AT
aaagccgcattgttcgtgagaatccagatgccaattatgaaaggcctgctcgtcggctcc
caactcctcccttggaagcaaacgacaacttggagcatcaaagccatgattcatcatcga
cagacggcttaagagacacttcacctgttggaaacaacacgaacccccgctcaggcgtgt
caagttcattatggatcaccactatcaactcatcaaaagatttggaatttgttaaaaacg
aatatatcaaactttggattgaagatcaggcttcacaaaaagaaatgaagaatctcaagg
caaagaggatcgaattgaaaatgaaacagaagaaattgaaagctgagctcaacgatgaaa
agatgaagaatcagaaattggaagaggcagctttcaacgacagaaaagaaaaagctgagt
tgaaaaagaaagtctccaatttggaacaatctgcgcaaaacacccagagaactctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCGCATTGTTCGTGAGAATCC 486 125 1385 Antisense
TTATGAAAGGCCTGCTCGTCGGCTC 170 679 1419 Antisense
CAACTCCTCCCTTGGAAGCAAACGA 382 185 1445 Antisense
GATTCATCATCGACAGACGGCTTAA 543 431 1492 Antisense
GACGGCTTAAGAGACACTTCACCTG 405 375 1507 Antisense
GAGACACTTCACCTGTTGGAAACAA 161 393 1517 Antisense
CGCTCAGGCGTGTCAAGTTCATTAT 119 255 1552 Antisense
CATTATGGATCACCACTATCAACTC 268 215 1571 Antisense
GGAAGAGGCAGCTTTCAACGACAGA 547 531 1764 Antisense
TCTCCAATTTGGAACAATCTGCGCA 661 607 1817 Antisense
TGCGCAAAACACCCAGAGAACTCTG 100 585 1836 Antisense
Sequence Source Affymetrix Proprietary Database