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[179118_at]

Description C25D7.4 /REP_DB=WormBase Gene ID /WP=CE08390 /TR=O17597 /GB=CAB02775.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 24      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 54.1
(-3)
P 		68.6
(-1.9)
A 		76.1
(-1.4)
P 		134.6
(3)
P 		81
B 40.6
(-3)
A 		61.8
(-0.9)
A 		99.9
(3)
P 		96.3
(2.6)
P 		59
C 55.3
(-3)
A 		61.8
(-2.5)
A 		88.7
(-0.3)
P 		128.3
(3)
P 		73
avr 50
(-3) 		64.1
(-1.8) 		88.2
(0.3) 		119.7
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 59.6
(0.3)
A 		64.8
(0.7)
A 		89.7
(3)
P 		47.2
(-0.9)
P 		34.3
(-2)
A 		23.8
(-3)
A 		66
B 77.4
(1.3)
P 		42.1
(-1.5)
A 		98.2
(3)
P 		38.3
(-1.8)
A 		52.9
(-0.7)
P 		24
(-3)
A 		74
C 72.3
(1.3)
P 		64.2
(0.7)
P 		11
(-3)
A 		96.9
(3)
P 		22.7
(-2.2)
A 		31.5
(-1.6)
A 		86
avr 69.8
(3) 		57
(1.2) 		66.3
(2.5) 		60.8
(1.8) 		36.6
(-1.6) 		26.4
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.7
(2.8)
P 		14.9
(-3)
A 		19.9
(3)
P 		19.7
(2.8)
P 		5
B 12.9
(-3)
A 		15.3
(-1.6)
A 		23.2
(3)
P 		20.5
(1.4)
P 		10
C 18.3
(-2.8)
A 		17.8
(-3)
A 		30.9
(3)
P 		21.6
(-1.3)
P 		13
avr 17
(-2.3) 		16
(-3) 		24.7
(3) 		20.6
(0.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11
(-1.2)
A 		23.1
(3)
A 		19.5
(1.8)
P 		12
(-0.8)
P 		10.3
(-1.4)
A 		5.8
(-3)
A 		17
B 26.9
(3)
P 		14
(-1.3)
A 		23.8
(2)
P 		10.2
(-2.6)
A 		21.5
(1.2)
P 		9
(-3)
A 		18
C 26.8
(3)
P 		19.6
(1.2)
P 		2.8
(-3)
A 		19.5
(1.2)
P 		7.4
(-1.9)
A 		10.6
(-1.1)
A 		24
avr 21.6
(3) 		18.9
(1.8) 		15.4
(0.2) 		13.9
(-0.5) 		13.1
(-0.9) 		8.5
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13860
Sequence Type Exemplar sequence
Representative Public ID C25D7.4 NCBI
Target Description C25D7.4 /REP_DB=WormBase Gene ID /WP=CE08390 /TR=O17597 /GB=CAB02775.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074303(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074303 NCBI Caenorhabditis elegans C25D7.4 (C25D7.4) mRNA, complete cds. 11/11 None
C25D7.4 ENSEMBL cdna:known chromosome:CEL140:V:15053660:15055584:-1 gene:C25D7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019707 6/11 Cross Hyb Matching Probes None
GENEFINDER00000019718 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15053659-15055584(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25D7.4
Entrez Gene 182883 Entrez gene
SwissProt O17597 EMBL-EBI
WormBase CE08390 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02775 Hypothetical protein C25D7.4 [Caenorhabditis elegans] ref|NP_506704.1| C25D7.4 [Caenorhabditis elegans] 0.0
blast CAA21768 Hypothetical protein T09F5.11 [Caenorhabditis elegans] emb|CAB05812.2| Hypothetical protein T09F5.11 [Caenorhabditis elegans] ref|NP_506746.1| T09F5.11 [Caenorhabditis elegans] 5.0E-36
blast CAA92202 Hypothetical protein T24C2.4 [Caenorhabditis elegans] ref|NP_510419.1| T24C2.4 [Caenorhabditis elegans] 5.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.7E-47
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.5E-10
Sequence
Target Sequence 
>C. ELEGANS:179118_AT
gctaattttcaaacgcccgaagctcgaactgcacttatttagtgtaatcatagaaattct
ttataaaaaggaagaacgagatcgtctatatatgtttttaacggagcttatgagaagagt
ggaaccaatcaatacaaaaacaataagctttactcgtatgcattgtgaagaaatgaaatc
cattttgtcattgttgaatgcaaacaatattgagaaaattgagttgaattttcatcatgg
aatacttttggaaaattatcttgcacagttggaacagtggaaaaatgccaaagaattgtg
tgccagtgctgtttttgcaggcttttacacctcaattgagaacttattcaattttcgaaa
atttgaaatcaatctggagacttttactgtagcggatgctgttaaaattaaaaatatcct
tcttaattctgccaacttcaactactgcaaaatcgaatattctatgcaatttgtggcaca
tcgattcgaagttgcaaggctttttcaaccaagcaacacaaatggaaatttggattattt
tgcttacaaatgctctggaggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTAATTTTCAAACGCCCGAAGCTC 495 299 366 Antisense
GAAGCTCGAACTGCACTTATTTAGT 87 343 384 Antisense
TAAGCTTTACTCGTATGCATTGTGA 32 639 509 Antisense
GCCAAAGAATTGTGTGCCAGTGCTG 473 277 652 Antisense
GTGCCAGTGCTGTTTTTGCAGGCTT 87 479 665 Antisense
TTTGCAGGCTTTTACACCTCAATTG 337 667 679 Antisense
GGAGACTTTTACTGTAGCGGATGCT 330 519 741 Antisense
AATATCCTTCTTAATTCTGCCAACT 603 173 778 Antisense
GTGGCACATCGATTCGAAGTTGCAA 613 491 838 Antisense
GTTGCAAGGCTTTTTCAACCAAGCA 429 439 856 Antisense
TTTGCTTACAAATGCTCTGGAGGGA 429 665 904 Antisense
Sequence Source Affymetrix Proprietary Database