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[179117_at]

Description F32B4.2 /REP_DB=WormBase Gene ID /WP=CE17741 /TR=O62204 /GB=CAB04234.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 71.7
(3)
A 		23.1
(-2)
A 		13
(-3)
A 		62.6
(2.1)
A 		59
B 22.4
(-2.9)
A 		93
(3)
A 		20.9
(-3)
A 		56.4
(-0)
A 		72
C 42.8
(-3)
A 		139.5
(3)
A 		62.5
(-1.8)
A 		61.7
(-1.8)
A 		97
avr 45.6
(-1.5) 		85.2
(3) 		32.1
(-3) 		60.2
(0.2) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 117.7
(0.4)
A 		23.9
(-2.8)
A 		58.1
(-1.7)
A 		19.2
(-3)
A 		70.2
(-1.3)
A 		195.1
(3)
P 		176
B 97.1
(1.8)
A 		39.7
(-3)
A 		78.5
(0.2)
A 		49.3
(-2.2)
A 		70.5
(-0.4)
P 		111.7
(3)
P 		72
C 68.7
(-0.2)
A 		12.7
(-3)
A 		84
(0.5)
A 		30.2
(-2.1)
A 		43.2
(-1.5)
M 		134.4
(3)
P 		122
avr 94.5
(0.4) 		25.4
(-3) 		73.5
(-0.6) 		32.9
(-2.6) 		61.3
(-1.2) 		147.1
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 26.1
(3)
A 		5
(-2.6)
A 		3.4
(-3)
A 		9.2
(-1.5)
A 		23
B 7.1
(-2.2)
A 		23
(3)
A 		4.8
(-3)
A 		12
(-0.6)
A 		18
C 14.2
(-2.2)
A 		40.1
(3)
A 		21.8
(-0.7)
A 		10.4
(-3)
A 		30
avr 15.8
(-0.3) 		22.7
(3) 		10
(-3) 		10.5
(-2.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 21.7
(-0.6)
A 		8.5
(-2.5)
A 		12.7
(-1.9)
A 		4.9
(-3)
A 		21.2
(-0.7)
A 		47.5
(3)
P 		43
B 33.8
(1.3)
A 		13.2
(-3)
A 		19.1
(-1.7)
A 		13.1
(-3)
A 		28.6
(0.3)
P 		41.7
(3)
P 		29
C 25.5
(0.2)
A 		3.9
(-3)
A 		21.4
(-0.4)
A 		6.1
(-2.7)
A 		14
(-1.5)
M 		45
(3)
P 		41
avr 27
(0.1) 		8.5
(-2.9) 		17.7
(-1.4) 		8
(-3) 		21.3
(-0.8) 		44.7
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1708
Sequence Type Exemplar sequence
Representative Public ID F32B4.2 NCBI
Target Description F32B4.2 /REP_DB=WormBase Gene ID /WP=CE17741 /TR=O62204 /GB=CAB04234.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060540
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060540 NCBI Caenorhabditis elegans F32B4.2 (F32B4.2) mRNA, complete cds. None
GENEFINDER00000030043 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11521063:11521936:-1 None
SNAP00000030033 ENSEMBL cdna:SNAP chromosome:CEL140:I:11521063:11525494:-1 None
F32B4.2 ENSEMBL cdna:known chromosome:CEL140:I:11521041:11521947:-1 gene:F32B4.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11520993-11521867(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32B4.2
Entrez Gene 173036 Entrez gene
SwissProt O62204 EMBL-EBI
WormBase CE36146 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04234 Hypothetical protein F32B4.2 [Caenorhabditis elegans] ref|NP_492941.2| F32B4.2 [Caenorhabditis elegans] 7.0E-57
blast CAB04234 Hypothetical protein F32B4.2 [Caenorhabditis elegans] ref|NP_492941.2| F32B4.2 [Caenorhabditis elegans] 2.0E-52
blast CAE69314 Hypothetical protein CBG15379 [Caenorhabditis briggsae] 3.0E-32
blast CAE69314 Hypothetical protein CBG15379 [Caenorhabditis briggsae] 4.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492941.2 1 7-29
F32B4.2 1 7-29
SNAP00000030033 1 21-43
GENEFINDER00000030043 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:179117_AT
cgcctactactactggagccagaaaaagaaaagctctgatacttcatctgccacgtcatc
ggagtccaacgatgttgtcatgatgtcatcatcggagcccagagccgatggaggagccga
ttcgaaggcaaagttcaatattgaggatgaaaatgtgagaagagtctgcgagaagctgtt
catggagcagatggatttgggggaagcttatttggaggatgaagaaaccgaggagctcgg
cgcaatccacatggccaacgcaatcgtgctcaccggagagactgctcagctgctcaaagt
gctccgcggctcgatttcaccggctcactttgccaatattcaaaagtacctcccatcggc
tgacttggtatggaatgttcagcctttacttcgaatttttgtgcattttcagcgtgttca
ccagcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCTACTACTACTGGAGCCAGAAA 513 255 87 Antisense
AAAAGCTCTGATACTTCATCTGCCA 100 133 115 Antisense
AGCCGATGGAGGAGCCGATTCGAAG 299 77 189 Antisense
GAGTCTGCGAGAAGCTGTTCATGGA 242 401 248 Antisense
TCCACATGGCCAACGCAATCGTGCT 619 587 332 Antisense
AATCGTGCTCACCGGAGAGACTGCT 538 169 348 Antisense
AGACTGCTCAGCTGCTCAAAGTGCT 112 71 365 Antisense
AATATTCAAAAGTACCTCCCATCGG 157 175 421 Antisense
CCTCCCATCGGCTGACTTGGTATGG 688 265 435 Antisense
GAATGTTCAGCCTTTACTTCGAATT 41 331 459 Antisense
CATTTTCAGCGTGTTCACCAGCTTC 673 213 490 Antisense
Sequence Source Affymetrix Proprietary Database