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[179116_at]

Description F55G7.1 /REP_DB=WormBase Gene ID /WP=CE03423 /TR=Q20855 /GB=CAA90609.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 51      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 49.5
(-2.8)
A 		72.8
(3)
A 		70.7
(2.5)
A 		48.5
(-3)
M 		24
B 51.3
(0.2)
P 		67.8
(3)
A 		61.8
(2)
A 		32.3
(-3)
A 		36
C 72.5
(0.5)
A 		85.9
(3)
A 		64.8
(-0.9)
A 		53.2
(-3)
A 		33
avr 57.8
(-0.4) 		75.5
(3) 		65.8
(1.1) 		44.7
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 21.5
(-3)
A 		35.9
(-0.8)
A 		50.8
(1.6)
A 		60.1
(3)
A 		54.3
(2.1)
A 		29.1
(-1.8)
A 		39
B 27.4
(-2.3)
A 		40.7
(1.1)
A 		48.2
(3)
A 		45.6
(2.3)
A 		24.7
(-3)
A 		37.6
(0.3)
A 		24
C 22.6
(-2.2)
A 		44.4
(1.5)
A 		43.4
(1.4)
A 		52.9
(3)
A 		24.3
(-1.9)
A 		18.1
(-3)
A 		35
avr 23.8
(-3) 		40.3
(0.4) 		47.5
(1.9) 		52.9
(3) 		34.4
(-0.8) 		28.3
(-2.1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18
(2.7)
A 		15.8
(1.6)
A 		18.5
(3)
A 		7.1
(-3)
M 		11
B 16.3
(2.8)
P 		16.7
(3)
A 		14.3
(1.5)
A 		6.9
(-3)
A 		10
C 24
(2.7)
A 		24.7
(3)
A 		22.6
(2.2)
A 		9
(-3)
A 		16
avr 19.4
(3) 		19.1
(2.8) 		18.5
(2.5) 		7.7
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4
(-3)
A 		12.8
(1.3)
A 		11.1
(0.4)
A 		15.2
(2.4)
A 		16.4
(3)
A 		7.1
(-1.5)
A 		12
B 9.5
(-3)
A 		13.5
(2.3)
A 		11.7
(-0.1)
A 		12.1
(0.5)
A 		10
(-2.3)
A 		14
(3)
A 		5
C 8.4
(-1.1)
A 		13.5
(3)
A 		11
(1)
A 		10.6
(0.6)
A 		7.9
(-1.5)
A 		6.1
(-3)
A 		7
avr 7.3
(-3) 		13.3
(3) 		11.3
(1) 		12.6
(2.3) 		11.4
(1.1) 		9.1
(-1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179116_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16263
Sequence Type Exemplar sequence
Representative Public ID F55G7.1 NCBI
Target Description F55G7.1 /REP_DB=WormBase Gene ID /WP=CE03423 /TR=Q20855 /GB=CAA90609.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077595 NCBI Caenorhabditis elegans F55G7.1 (F55G7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000016067 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11922562:11929168:1 11/11 None
SNAP00000016059 ENSEMBL cdna:SNAP chromosome:CEL140:X:11925136:11926536:1 11/11 None
F55G7.1 ENSEMBL cdna:known chromosome:CEL140:X:11924382:11926901:1 gene:F55G7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11924381-11926901(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G7.1
Entrez Gene 186331 Entrez gene
SwissProt Q20855 EMBL-EBI
WormBase CE03423 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90609 Hypothetical protein F55G7.1 [Caenorhabditis elegans] ref|NP_509996.1| F55G7.1 [Caenorhabditis elegans] 0.0
blast CAA90609 Hypothetical protein F55G7.1 [Caenorhabditis elegans] ref|NP_509996.1| F55G7.1 [Caenorhabditis elegans] 1.0E-149
blast CAE69403 Hypothetical protein CBG15547 [Caenorhabditis briggsae] 7.0E-33
blast CAE69403 Hypothetical protein CBG15547 [Caenorhabditis briggsae] 8.0E-33
blast CAE69403 Hypothetical protein CBG15547 [Caenorhabditis briggsae] 2.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016067 1 56-78
Sequence
Target Sequence 
>C. ELEGANS:179116_AT
aaacagtctgacacaaaggcgccgacgacaacaccaaatttgttaagtgaacccgagaca
ccagagttcaacttggcaattttaaaagttgctaaatggctgcaaatgtcaaaagatatc
ggagacgttttcactggaaatggacaagcccagcgatcaactggattgaattacaaacac
agaactattccaacccaagcctgttatcaaggtcctcgcccaattccggcttacaaaatc
ccatgccatggctcccaatctagctgcaatctccaaaaacttggcgttccattgacaatc
gcgagaagacactccacggtagacatgaaagtggagacaaaaaccagaagcaatggaggc
ggcgatgacaacgagacgacggcgagcaatactggaggagactcagagaagccggttgaa
acgaacaatgaggctagccaattgtcagttgccgagaactgctcaccgagcattgaagtc
caaggagacatcaagtcagcggtctcacatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACAGTCTGACACAAAGGCGCCGA 61 129 601 Antisense
ACCCGAGACACCAGAGTTCAACTTG 439 89 651 Antisense
ACAGAACTATTCCAACCCAAGCCTG 313 109 779 Antisense
CAAGCCTGTTATCAAGGTCCTCGCC 669 185 796 Antisense
CTCGCCCAATTCCGGCTTACAAAAT 233 233 815 Antisense
TCCCAATCTAGCTGCAATCTCCAAA 432 597 853 Antisense
CTTGGCGTTCCATTGACAATCGCGA 4 219 880 Antisense
GAGAAGACACTCCACGGTAGACATG 651 391 903 Antisense
GAGGCGGCGATGACAACGAGACGAC 43 405 956 Antisense
GCTAGCCAATTGTCAGTTGCCGAGA 498 301 1033 Antisense
ACATCAAGTCAGCGGTCTCACATGC 707 103 1088 Antisense
Sequence Source Affymetrix Proprietary Database