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[179115_at]

Description F42E8.1 /REP_DB=WormBase Gene ID /WP=CE10302 /TR=Q20336 /GB=CAB01428.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 3.1
(-2.8)
A 		1.5
(-3)
A 		3.3
(-2.8)
A 		57.6
(3)
A 		56
B 9.3
(-1.8)
A 		2.6
(-3)
A 		5.7
(-2.5)
A 		36.6
(3)
A 		34
C 4.3
(-3)
A 		25.1
(-0.9)
A 		15.5
(-1.9)
A 		64.5
(3)
A 		60
avr 5.6
(-3) 		9.7
(-2.5) 		8.2
(-2.7) 		52.9
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 18.3
(2)
A 		3.1
(-2.7)
A 		12.1
(0.1)
A 		21.4
(3)
A 		9.8
(-0.6)
A 		2
(-3)
A 		19
B 24.4
(0.1)
A 		26.4
(0.4)
A 		4.2
(-3)
A 		4.7
(-2.9)
A 		43.4
(3)
A 		21.1
(-0.4)
A 		39
C 4
(-3)
A 		40.8
(3)
A 		26.1
(0.6)
A 		10.4
(-2)
A 		7.5
(-2.4)
A 		10
(-2)
A 		37
avr 15.6
(-0.8) 		23.4
(3) 		14.1
(-1.5) 		12.2
(-2.4) 		20.2
(1.5) 		11
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.1
(-2.4)
A 		0.3
(-3)
A 		0.9
(-2.6)
A 		8.4
(3)
A 		8
B 3
(-1)
A 		0.6
(-3)
A 		1.3
(-2.4)
A 		7.8
(3)
A 		7
C 1.4
(-3)
A 		7.2
(0.7)
A 		5.4
(-0.5)
A 		10.9
(3)
A 		10
avr 1.8
(-3) 		2.7
(-2.3) 		2.5
(-2.4) 		9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.4
(0.6)
A 		1.1
(-2.3)
A 		2.6
(-0.4)
A 		5.4
(3)
A 		2.9
(-0.1)
A 		0.5
(-3)
A 		5
B 8.5
(-0.3)
A 		8.8
(-0.2)
A 		1
(-3)
A 		1.2
(-2.9)
A 		17.6
(3)
A 		7.9
(-0.5)
A 		17
C 1.5
(-3)
A 		12.4
(3)
A 		6.6
(-0.2)
A 		2.1
(-2.7)
A 		2.4
(-2.5)
A 		3.4
(-2)
A 		11
avr 4.5
(-1) 		7.4
(2.7) 		3.4
(-2.4) 		2.9
(-3) 		7.6
(3) 		3.9
(-1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13883
Sequence Type Exemplar sequence
Representative Public ID F42E8.1 NCBI
Target Description F42E8.1 /REP_DB=WormBase Gene ID /WP=CE10302 /TR=Q20336 /GB=CAB01428.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073862(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073862 NCBI Caenorhabditis elegans F42E8.1 (F42E8.1) mRNA, complete cds. 11/11 None
F42E8.1 ENSEMBL cdna:known chromosome:CEL140:V:13065020:13066710:1 gene:F42E8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022854 2/11 Cross Hyb Matching Probes None
GENEFINDER00000022859 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13065019-13066710(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42E8.1
Entrez Gene 185667 Entrez gene
SwissProt Q20336 EMBL-EBI
WormBase CE10302 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01428 Hypothetical protein F42E8.1 [Caenorhabditis elegans] ref|NP_506263.1| F42E8.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179115_AT
tgatcattcatgacttttgctccaccaacgcatcggagaaacatttgaaaaatctgaaac
ttgccaagcaactgacaaaatctaaatgcctggatgaagcccaatcatctgtcgaagatt
tgaacagtgatacgaagctcgaggacttgcaactccatatctgtcagcgtggaattgaaa
atttttccggatcgactttttttgattatttttctatgaaagcgttggtaataatgcgtt
caaagggaattccggatttcatgttgaatgtgttgaatggaattgcaaaccatgcaaaca
atatttcccagaaaaatgtgagtaatttcctacttatgaatgtatattatggctttacaa
ttatgtttctaaaatttcgcatcgaaaagaaacgtttttcaattagagaaaatatcaatt
ttcagattccgtcttcttcaagcaatgcaagagcagcaacctcaagtggtggttttattt
tctcccagcattatttctgtcccaatttgactttttcacaatgtgttgtatttatgtccc
gattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCATTCATGACTTTTGCTCCAC 478 565 665 Antisense
TTTGCTCCACCAACGCATCGGAGAA 564 667 680 Antisense
TGAAGCCCAATCATCTGTCGAAGAT 77 575 759 Antisense
CGAAGCTCGAGGACTTGCAACTCCA 658 251 797 Antisense
TGCAACTCCATATCTGTCAGCGTGG 147 577 812 Antisense
AAGGGAATTCCGGATTTCATGTTGA 132 159 907 Antisense
AATTTTCAGATTCCGTCTTCTTCAA 286 175 1081 Antisense
GCAAGAGCAGCAACCTCAAGTGGTG 506 321 1111 Antisense
TTTCTCCCAGCATTATTTCTGTCCC 428 671 1143 Antisense
TATTTCTGTCCCAATTTGACTTTTT 582 661 1156 Antisense
GTGTTGTATTTATGTCCCGATTTTT 162 483 1187 Antisense
Sequence Source Affymetrix Proprietary Database