[Home] | [Total List]

[179114_at]

Description W06A7.2 /REP_DB=WormBase Gene ID /WP=CE14664 /TR=Q23186 /GB=CAB01521.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 32      6grp_total > 41      4grp_total > 50      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1425
1 2 3 4 range
A 507.1
(-1.4)
P 		1204.5
(2.9)
P 		1218.4
(3)
P 		252.8
(-3)
P 		966
B 454.7
(-1.3)
P 		1247.8
(3)
P 		1203.7
(2.8)
P 		152
(-3)
P 		1096
C 556.1
(-1.7)
P 		1576.5
(3)
P 		1274.7
(1.6)
P 		276.8
(-3)
P 		1300
avr 506
(-1.5) 		1342.9
(3) 		1232.3
(2.4) 		227.2
(-3) 		1116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1253
1 2 3 4 5 6 range
A 1309.6
(2.2)
P 		1324.3
(2.3)
P 		1344.1
(2.4)
P 		1439.4
(3)
P 		1224.9
(1.6)
P 		498.7
(-3)
P 		941
B 1445.2
(1.4)
P 		1300.7
(0.6)
P 		1751.3
(3)
P 		1472.6
(1.5)
P 		1244.8
(0.4)
P 		601
(-3)
P 		1150
C 1134.8
(-0.7)
P 		1240.4
(-0)
P 		1330.9
(0.5)
P 		1720.2
(3)
P 		1011.8
(-1.5)
P 		768.7
(-3)
P 		952
avr 1296.5
(1.4) 		1288.5
(1.3) 		1475.4
(2.6) 		1544.1
(3) 		1160.5
(0.5) 		622.8
(-3) 		921
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 184.6
(0.1)
P 		261.5
(1.8)
P 		318.5
(3)
P 		37
(-3)
P 		282
B 145
(-0.6)
P 		308.2
(3)
P 		278.9
(2.4)
P 		32.4
(-3)
P 		276
C 184.1
(-1)
P 		453.2
(3)
P 		444.3
(2.9)
P 		46.7
(-3)
P 		407
avr 171.2
(-0.4) 		341
(2.9) 		347.2
(3) 		38.7
(-3) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 241.4
(-0.9)
P 		471
(3)
P 		292.7
(-0.1)
P 		365.1
(1.2)
P 		369.6
(1.3)
P 		121.4
(-3)
P 		350
B 502.9
(2.9)
P 		433
(1.5)
P 		425.3
(1.3)
P 		390.1
(0.5)
P 		505.7
(3)
P 		224.1
(-3)
P 		282
C 420.6
(3)
P 		378.5
(1.5)
P 		338.7
(-0)
P 		345.9
(0.3)
P 		327.4
(-0.4)
P 		257.3
(-3)
P 		163
avr 388.3
(2) 		427.5
(3) 		352.2
(1) 		367
(1.4) 		400.9
(2.3) 		200.9
(-3) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14201
Sequence Type Exemplar sequence
Representative Public ID W06A7.2 NCBI
Target Description W06A7.2 /REP_DB=WormBase Gene ID /WP=CE14664 /TR=Q23186 /GB=CAB01521.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074252(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074252 NCBI Caenorhabditis elegans W06A7.2 (W06A7.2) mRNA, complete cds. 11/11 None
SNAP00000021519 ENSEMBL cdna:SNAP chromosome:CEL140:V:14824448:14825944:1 11/11 None
GENEFINDER00000021527 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14824448:14825944:1 11/11 None
W06A7.2 ENSEMBL cdna:known chromosome:CEL140:V:14824448:14825944:1 gene:W06A7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028854 1/11 Cross Hyb Matching Probes None
SNAP00000039258 1/11 Cross Hyb Matching Probes None
GENEFINDER00000039272 1/11 Cross Hyb Matching Probes None
K02E11.8 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14824447-14825944(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06A7.2
Entrez Gene 189231 Entrez gene
SwissProt Q23186 EMBL-EBI
WormBase CE14664 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01521 Hypothetical protein W06A7.2 [Caenorhabditis elegans] ref|NP_506653.1| W06A7.2 [Caenorhabditis elegans] 1.0E-87
blast CAE66364 Hypothetical protein CBG11621 [Caenorhabditis briggsae] 4.0E-84
blast CAE17860 Hypothetical protein K02E11.8 [Caenorhabditis elegans] ref|NP_001024025.1| K02E11.8 [Caenorhabditis elegans] 3.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506653.1 2 39-61,71-93
W06A7.2 2 39-61,71-93
SNAP00000021519 2 39-61,71-93
GENEFINDER00000021527 2 39-61,71-93
Sequence
Target Sequence 
>C. ELEGANS:179114_AT
ggatggtgattacgttccctggtacagtcggagagctccaccagttttctgttttccatg
ccttccagcttacatgggtatttggccagcaagaaaatgtgttctgataatcggagcact
tcttttcttcttcggagtcattattcttctggcaatgcttctcacctgtattgcaattga
atgtgctggagttgcctccgctttgatcccactggctctgatcctcatcattgtcggaat
tcttcttttccattgcggatatgcagctcatctcttggataatcatggtgaaatcccaat
caaaaagacaactacaactacaaccacaacagtaatggatccagaatctcacgaagacga
gatcagactatttgagactgtgcatagagagcaagttccaaatgtaagacaaggattctg
gcaattcgacgagaatctctcatggcaagcagcttcaaatccatatccaattcaacacac
tct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGTGATTACGTTCCCTGGTAC 133 515 30 Antisense
GGTACAGTCGGAGAGCTCCACCAGT 78 505 50 Antisense
CTCCACCAGTTTTCTGTTTTCCATG 329 235 65 Antisense
ATGCCTTCCAGCTTACATGGGTATT 623 39 87 Antisense
ATAATCGGAGCACTTCTTTTCTTCT 550 25 136 Antisense
TTCGGAGTCATTATTCTTCTGGCAA 175 695 160 Antisense
AATGCTTCTCACCTGTATTGCAATT 67 167 183 Antisense
GAATTCTTCTTTTCCATTGCGGATA 189 325 266 Antisense
CGGATATGCAGCTCATCTCTTGGAT 630 243 285 Antisense
GAGAATCTCTCATGGCAAGCAGCTT 456 391 460 Antisense
ATCCATATCCAATTCAACACACTCT 52 41 488 Antisense
Sequence Source Affymetrix Proprietary Database