[Home] | [Total List]

[179113_at]

Description T06E6.9 /REP_DB=WormBase Gene ID /WP=CE16368 /TR=O45763 /GB=CAB03318.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 03      4grp_total > 18      6grp_cgc > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 44.7
(-3)
A 		54.9
(-1.5)
A 		82.2
(2.4)
A 		86.7
(3)
P 		42
B 57.7
(-1.4)
P 		68.1
(3)
A 		54
(-3)
P 		58.7
(-1)
P 		14
C 55.8
(-1.8)
P 		79.4
(-0.2)
P 		37.6
(-3)
A 		128.5
(3)
P 		91
avr 52.7
(-3) 		67.5
(-0.7) 		57.9
(-2.2) 		91.3
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 42.8
(1)
A 		42.2
(0.9)
A 		21
(-3)
A 		43.9
(1.2)
A 		38
(0.1)
M 		53.9
(3)
A 		33
B 49.3
(0.7)
A 		23.8
(-3)
A 		63.4
(2.8)
P 		57.6
(2)
P 		64.7
(3)
P 		26.1
(-2.7)
A 		41
C 54.6
(0.1)
M 		88.9
(3)
P 		39.5
(-1.2)
A 		49.3
(-0.4)
A 		18.5
(-3)
A 		40
(-1.2)
A 		70
avr 48.9
(1.6) 		51.6
(3) 		41.3
(-2.3) 		50.3
(2.3) 		40.4
(-2.8) 		40
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 16.3
(-0.3)
A 		11.9
(-3)
A 		21.5
(3)
A 		12.7
(-2.5)
P 		10
B 18.4
(3)
P 		16.8
(1.4)
A 		12.5
(-3)
P 		12.5
(-3)
P 		6
C 18.5
(0.3)
P 		22.8
(3)
P 		13.1
(-3)
A 		21.7
(2.3)
P 		10
avr 17.7
(3) 		17.2
(1.6) 		15.7
(-2.7) 		15.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.9
(-1.1)
A 		15
(3)
A 		4.6
(-3)
A 		11.1
(0.8)
A 		11.5
(1)
M 		13.1
(1.9)
A 		10
B 17.1
(0)
A 		7.9
(-3)
A 		15.4
(-0.6)
P 		15.3
(-0.6)
P 		26.3
(3)
P 		9.7
(-2.4)
A 		18
C 20.3
(1.1)
M 		27.1
(3)
P 		10.1
(-1.8)
A 		9.9
(-1.9)
A 		6
(-3)
A 		13.4
(-0.9)
A 		21
avr 15.1
(1.6) 		16.7
(3) 		10
(-3) 		12.1
(-1.1) 		14.6
(1.1) 		12.1
(-1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13326
Sequence Type Exemplar sequence
Representative Public ID T06E6.9 NCBI
Target Description T06E6.9 /REP_DB=WormBase Gene ID /WP=CE16368 /TR=O45763 /GB=CAB03318.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074433 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-265) (srh-265) mRNA, complete cds. 11/11 None
SNAP00000027746 ENSEMBL cdna:SNAP chromosome:CEL140:V:15418837:15420202:1 11/11 None
GENEFINDER00000027751 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15416733:15421919:1 11/11 None
T06E6.9 ENSEMBL cdna:known chromosome:CEL140:V:15418837:15420202:1 gene:T06E6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15418836-15420202(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-265
Ensembl T06E6.9
Entrez Gene 188188 Entrez gene
SwissProt O45763 EMBL-EBI
WormBase CE16368 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03318 Hypothetical protein T06E6.9 [Caenorhabditis elegans] ref|NP_506834.1| Serpentine Receptor, class H family member (srh-265) [Caenorhabditis elegans] 0.0
blast CAB03317 Hypothetical protein T06E6.8 [Caenorhabditis elegans] ref|NP_506833.2| Serpentine Receptor, class H family member (srh-264) [Caenorhabditis elegans] 1.0E-151
blast CAB03319 Hypothetical protein T06E6.10 [Caenorhabditis elegans] ref|NP_506835.1| T06E6.10 [Caenorhabditis elegans] 1.0E-149
blast CAB04559 Hypothetical protein K03D7.4 [Caenorhabditis elegans] ref|NP_507434.1| Serpentine Receptor, class H family member (srh-261) [Caenorhabditis elegans] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 4.2E-20
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.4E-93
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.3E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506834.1 7 10-32,53-75,85-107,128-150,187-209,235-257,272-291
T06E6.9 7 10-32,53-75,85-107,128-150,187-209,235-257,272-291
SNAP00000027746 7 10-32,53-75,85-107,128-150,187-209,235-257,272-291
GENEFINDER00000027751 10 10-32,52-74,94-112,133-150,273-295,316-338,375-397,423-445,460-479,506-528
Sequence
Target Sequence 
>C. ELEGANS:179113_AT
tttcgcgttccattcattatcattaattatggtgccgttggaattttcatgcttccgacg
tttttgaatactcctgatcagttacaagctattgatttagctttcaagcaagttccgaac
cttcccgttgaactcagatccatgaactttttcatatgggcaacagatttcaaacttttt
ctgggatctttcatcttcatcacagcatttcaacttacggaatttgttcctttgatttta
ataactgattggaatgtgagatcgtcaatcaagaaatcaacgcagtcacggcaaacaatg
caacttcagttgaagttcttaatggctttatatgcacagagcggggcatttttcttgact
tgttttactccatacgtatatatgttgtattcttgtttcacaaactactacaatcccatt
gccaacaattttattttcatttttgtggcagcacgtggatcgttctgcacggtaattctg
ctctcggcatataagccttataagaaagcagtagtcaatatcttccggttaattagctcc
tcgatcggttgtttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGCGTTCCATTCATTATCATTA 181 671 397 Antisense
TTCAAGCAAGTTCCGAACCTTCCCG 537 637 499 Antisense
ATCTTTCATCTTCATCACAGCATTT 682 31 582 Antisense
CAGAGCGGGGCATTTTTCTTGACTT 28 205 733 Antisense
TCTTGACTTGTTTTACTCCATACGT 255 619 749 Antisense
AAACTACTACAATCCCATTGCCAAC 633 127 798 Antisense
GGCAGCACGTGGATCGTTCTGCACG 640 535 843 Antisense
CGGTAATTCTGCTCTCGGCATATAA 145 245 866 Antisense
AGCAGTAGTCAATATCTTCCGGTTA 218 77 903 Antisense
ATCTTCCGGTTAATTAGCTCCTCGA 298 29 916 Antisense
TTAGCTCCTCGATCGGTTGTTTCAA 103 683 929 Antisense
Sequence Source Affymetrix Proprietary Database