[Home] | [Total List]

[179112_at] 7TM receptor, srbc family

Description F54B8.8 /REP_DB=WormBase Gene ID /WP=CE16110 /TR=O45557 /GB=CAB07621.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 27      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 57.9
(1.6)
A 		7.9
(-2.8)
A 		5.6
(-3)
A 		73.4
(3)
A 		68
B 47.6
(-3)
A 		79.7
(3)
A 		72.9
(1.7)
A 		58
(-1.1)
A 		32
C 24.1
(-1.9)
A 		107.4
(2.6)
A 		4.2
(-3)
A 		113.9
(3)
A 		110
avr 43.2
(-1.3) 		65
(1.1) 		27.6
(-3) 		81.8
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 6.8
(-2.9)
A 		6.3
(-3)
A 		48.7
(3)
A 		12.6
(-2.1)
A 		18.6
(-1.3)
A 		30.4
(0.4)
A 		42
B 21
(0.8)
A 		31.5
(2.9)
A 		32
(3)
A 		7.3
(-2)
A 		11
(-1.2)
A 		2.3
(-3)
A 		30
C 20.5
(-0.8)
A 		51.5
(3)
A 		4.4
(-2.8)
A 		8.6
(-2.3)
A 		3.8
(-2.9)
A 		3
(-3)
A 		49
avr 16.1
(-1) 		29.8
(3) 		28.4
(2.6) 		9.5
(-3) 		11.1
(-2.5) 		11.9
(-2.3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21.1
(3)
A 		1.7
(-2.9)
A 		1.5
(-3)
A 		10.7
(-0.2)
A 		20
B 15.2
(-0.6)
A 		19.7
(3)
A 		16.9
(0.7)
A 		12.3
(-3)
A 		7
C 8
(-1.7)
A 		30.9
(3)
A 		1.5
(-3)
A 		19.2
(0.6)
A 		29
avr 14.8
(1.6) 		17.4
(3) 		6.6
(-3) 		14.1
(1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.2
(-2.4)
A 		10.6
(3)
A 		3.2
(-1.7)
A 		5.6
(-0.2)
A 		7.4
(1)
A 		9
B 7.3
(1)
A 		10.5
(3)
A 		7.8
(1.3)
A 		1.9
(-2.4)
A 		4.5
(-0.8)
A 		0.9
(-3)
A 		10
C 7.6
(-0.3)
A 		15.7
(3)
A 		1.1
(-3)
A 		1.7
(-2.7)
A 		1.2
(-2.9)
A 		1
(-3)
A 		15
avr 5.4
(-0.4) 		9.5
(3) 		6.5
(0.5) 		2.3
(-3) 		3.8
(-1.8) 		3.1
(-2.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14359
Sequence Type Exemplar sequence
Representative Public ID F54B8.8 NCBI
Target Description F54B8.8 /REP_DB=WormBase Gene ID /WP=CE16110 /TR=O45557 /GB=CAB07621.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074552 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-50) (srbc-50) mRNA, complete cds. 11/11 None
F54B8.8 ENSEMBL cdna:known chromosome:CEL140:V:15826482:15827550:-1 gene:F54B8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15826481-15827550(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-50
Ensembl F54B8.8
Entrez Gene 186205 Entrez gene
SwissProt O45557 EMBL-EBI
WormBase CE16110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07621 Hypothetical protein F54B8.8 [Caenorhabditis elegans] ref|NP_506953.1| Serpentine Receptor, class BC (class B-like) family member (srbc-50) [Caenorhabditis elegans] 1.0E-157
blast CAB07629 Hypothetical protein F54B8.9 [Caenorhabditis elegans] ref|NP_506954.1| Serpentine Receptor, class BC (class B-like) family member (srbc-51) [Caenorhabditis elegans] 5.0E-68
blast CAB07630 Hypothetical protein F54B8.10 [Caenorhabditis elegans] ref|NP_506955.1| Serpentine Receptor, class BC (class B-like) family member (srbc-52) [Caenorhabditis elegans] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 9.8E-106
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506953.1 6 5-27,42-64,85-107,127-149,182-201,216-238
F54B8.8 6 5-27,42-64,85-107,127-149,182-201,216-238
Sequence
Target Sequence 
>C. ELEGANS:179112_AT
tggaaccgttcgttcaactctgacttttttggttacaatggacagagtgatcggttcatt
ttttccaattttttattataatcatcgccacaaactttcgaattatatttttttgatttt
catttcatcagtagtaattttggatcaatatgttttattcgtatattgcaaaaatactga
cgatattccattggaatgtgacaattttcattgtatgataaatcaatgctttaataatta
ttggaagcgccatgaaagaatagcttgcattttgttgggatgttcctcaatcttgctatt
tttacgactttttgttttgacttattgccagcaaactccaaacaatcattcattgtcaaa
ggccacactattcgcccttgtcgattctacgataatctgtttattgaatatattacctcc
atttattttctccaaacttccaaaaattaattttcgaaactatggcccactggtctccat
tccaagatgcggtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAACCGTTCGTTCAACTCTGACT 378 545 297 Antisense
GTGATCGGTTCATTTTTTCCAATTT 653 481 343 Antisense
AATCATCGCCACAAACTTTCGAATT 352 171 376 Antisense
GGATGTTCCTCAATCTTGCTATTTT 184 515 574 Antisense
GACTTTTTGTTTTGACTTATTGCCA 164 373 602 Antisense
GCCAGCAAACTCCAAACAATCATTC 684 279 623 Antisense
TGTCAAAGGCCACACTATTCGCCCT 270 557 650 Antisense
TTCGCCCTTGTCGATTCTACGATAA 402 697 667 Antisense
TCCATTTATTTTCTCCAAACTTCCA 281 561 714 Antisense
TTCGAAACTATGGCCCACTGGTCTC 415 695 749 Antisense
TGGTCTCCATTCCAAGATGCGGTGG 645 549 767 Antisense
Sequence Source Affymetrix Proprietary Database