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[179111_at]

Description K08G2.7 /REP_DB=WormBase Gene ID /WP=CE11968 /TR=Q93869 /GB=CAB03194.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 02      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 17.4
(-1.4)
A 		2.4
(-3)
A 		8.2
(-2.4)
A 		57.9
(3)
A 		56
B 18.8
(-3)
A 		36.2
(-1.2)
A 		29.6
(-1.9)
A 		75.3
(3)
A 		57
C 16.1
(-2.1)
A 		2.8
(-3)
A 		6.2
(-2.8)
A 		93.6
(3)
P 		91
avr 17.4
(-2.7) 		13.8
(-3) 		14.7
(-2.9) 		75.6
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 19.2
(-1.4)
A 		15.4
(-1.8)
A 		58.2
(3)
A 		5.2
(-3)
A 		7.7
(-2.7)
A 		31.1
(-0.1)
A 		53
B 54
(3)
A 		25.9
(-0.3)
A 		4.1
(-2.9)
A 		4
(-3)
A 		25
(-0.5)
A 		3.6
(-3)
A 		50
C 23.7
(-1.2)
A 		68.2
(3)
A 		31.4
(-0.5)
A 		22.7
(-1.3)
A 		4.4
(-3)
A 		17.2
(-1.8)
A 		64
avr 32.3
(2) 		36.5
(3) 		31.2
(1.8) 		10.6
(-3) 		12.4
(-2.6) 		17.3
(-1.4) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.3
(1.4)
A 		0.5
(-3)
A 		2.1
(-1.8)
A 		8.5
(3)
A 		8
B 6
(-3)
A 		8.9
(-1.3)
A 		6.9
(-2.5)
A 		16
(3)
A 		10
C 5.3
(-1.2)
A 		0.8
(-3)
A 		2.2
(-2.4)
A 		15.8
(3)
P 		15
avr 5.9
(-1.5) 		3.4
(-3) 		3.7
(-2.8) 		13.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 3.5
(-1.8)
A 		5.5
(-0.8)
A 		12.7
(3)
A 		1.3
(-3)
A 		2.3
(-2.5)
A 		7.6
(0.3)
A 		11
B 18.8
(3)
A 		8.6
(-0.4)
A 		1
(-3)
A 		1.1
(-3)
A 		10.1
(0.1)
A 		1.3
(-2.9)
A 		18
C 8.8
(-0.7)
A 		20.8
(3)
A 		8
(-1)
A 		4.6
(-2)
A 		1.4
(-3)
A 		5.8
(-1.6)
A 		19
avr 10.4
(2.2) 		11.6
(3) 		7.2
(0.2) 		2.3
(-3) 		4.6
(-1.5) 		4.9
(-1.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12968
Sequence Type Exemplar sequence
Representative Public ID K08G2.7 NCBI
Target Description K08G2.7 /REP_DB=WormBase Gene ID /WP=CE11968 /TR=Q93869 /GB=CAB03194.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074560 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-12) (srz-12) mRNA, complete cds. 11/11 None
K08G2.7 ENSEMBL cdna:known chromosome:CEL140:V:15864036:15865283:-1 gene:K08G2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15864035-15865283(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-12
Ensembl K08G2.7
Entrez Gene 187173 Entrez gene
SwissProt Q93869 EMBL-EBI
WormBase CE11968 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03194 Hypothetical protein K08G2.7 [Caenorhabditis elegans] ref|NP_506961.1| Serpentine Receptor, class Z family member (srz-12) [Caenorhabditis elegans] 0.0
blast CAB07253 Hypothetical protein K05D4.3 [Caenorhabditis elegans] ref|NP_507078.2| Serpentine Receptor, class Z family member (srz-14) [Caenorhabditis elegans] 3.0E-46
blast CAD89722 Hypothetical protein K05D4.8 [Caenorhabditis elegans] ref|NP_001024030.1| Serpentine Receptor, class Z family member (srz-13) [Caenorhabditis elegans] 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.7E-86
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506961.1 7 29-51,64-86,96-114,152-174,189-211,232-251,266-280
K08G2.7 7 29-51,64-86,96-114,152-174,189-211,232-251,266-280
Sequence
Target Sequence 
>C. ELEGANS:179111_AT
tcctggccattcaaagattcactctatatttctatccatcttcggagaaatatgtgaaga
ttacgccgactactctccaatggataatttttattgaatatctatattttttagcagagc
ctttacttctagtgtattttgcacatatttctaatttaaaacatctgaactatcaaattg
atatgtatttcttttttggcgagcatattttcctaattttatctaatagtctgtacgttc
caattataatcagcattcggaagttaacgcatttgacatctgctcaacaaaacaaacctc
aaaaatttattatgtgccagtgcctgctgatagttgtggaaaaaattatatttggaatat
gcattttctttaaactttcgtcggaatatcatacgatgaaagcaatatcaactacaagag
acatgtatgtctcaatatttgttatacaactgtcatatattttgtgcaacaagcggaata
tgagctcatttctcaaattgttcaaatccgatgttacttgcctgaaattttattgtccct
gttgccggatattcaagtcatcaagaactcaaccagaggcaaccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGGCCATTCAAAGATTCACTCT 230 593 386 Antisense
ACTCTATATTTCTATCCATCTTCGG 157 101 406 Antisense
TGTGAAGATTACGCCGACTACTCTC 10 557 438 Antisense
TAGCAGAGCCTTTACTTCTAGTGTA 126 653 497 Antisense
TAGTCTGTACGTTCCAATTATAATC 643 651 612 Antisense
TAACGCATTTGACATCTGCTCAACA 392 639 650 Antisense
TATGTGCCAGTGCCTGCTGATAGTT 368 655 696 Antisense
TGCATTTTCTTTAAACTTTCGTCGG 502 577 745 Antisense
AAATCCGATGTTACTTGCCTGAAAT 200 119 889 Antisense
GAAATTTTATTGTCCCTGTTGCCGG 533 363 909 Antisense
AAGAACTCAACCAGAGGCAACCGCC 239 151 948 Antisense
Sequence Source Affymetrix Proprietary Database