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[179108_at]

Description K07F5.7 /REP_DB=WormBase Gene ID /WP=CE06122 /TR=Q21290 /GB=CAA94275.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 1.9
(-3)
A 		7.9
(-1.9)
A 		5.4
(-2.4)
A 		34.7
(3)
A 		33
B 1.3
(-3)
A 		49.7
(3)
A 		6.1
(-2.4)
A 		42.3
(2.1)
A 		48
C 16.6
(3)
A 		7.1
(-0.8)
A 		1.6
(-3)
A 		9.3
(0.1)
A 		15
avr 6.6
(-2.5) 		21.6
(1.2) 		4.4
(-3) 		28.8
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.7
(-1)
A 		21
(3)
A 		5.1
(-2.2)
A 		7.1
(-1.5)
A 		3.9
(-2.5)
A 		2.5
(-3)
A 		19
B 3
(-2.4)
A 		14.4
(3)
A 		2.7
(-2.5)
A 		3.6
(-2.1)
A 		4.5
(-1.7)
A 		1.7
(-3)
A 		13
C 2.9
(-2.3)
A 		0.9
(-3)
A 		18.3
(3)
A 		10.3
(0.2)
A 		1.8
(-2.7)
A 		1.6
(-2.8)
A 		17
avr 4.9
(-1.2) 		12.1
(3) 		8.7
(1) 		7
(0) 		3.4
(-2.1) 		1.9
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.7
(-3)
A 		1.7
(-1.6)
A 		1.4
(-2)
A 		5.1
(3)
A 		4
B 0.4
(-3)
A 		12.3
(3)
A 		1.4
(-2.5)
A 		9
(1.3)
A 		12
C 5.5
(3)
A 		2.1
(-1.2)
A 		0.6
(-3)
A 		1.6
(-1.8)
A 		5
avr 2.2
(-1.5) 		5.4
(3) 		1.1
(-3) 		5.2
(2.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.6
(-2.1)
A 		7.5
(3)
A 		1.1
(-2.6)
A 		1.8
(-2)
A 		1.2
(-2.5)
A 		0.6
(-3)
A 		7
B 1
(-2.4)
A 		4.8
(3)
A 		0.7
(-2.9)
A 		0.9
(-2.6)
A 		1.8
(-1.3)
A 		0.6
(-3)
A 		4
C 1.1
(-1.9)
A 		0.3
(-3)
A 		4.7
(3)
A 		2.1
(-0.5)
A 		0.6
(-2.6)
A 		0.5
(-2.7)
A 		4
avr 1.2
(-2) 		4.2
(3) 		2.2
(-0.3) 		1.6
(-1.3) 		1.2
(-2) 		0.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9104
Sequence Type Exemplar sequence
Representative Public ID K07F5.7 NCBI
Target Description K07F5.7 /REP_DB=WormBase Gene ID /WP=CE06122 /TR=Q21290 /GB=CAA94275.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069364 NCBI Caenorhabditis elegans K07F5.7 (K07F5.7) mRNA, complete cds. 11/11 None
SNAP00000004250 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9847697:9848148:-1 11/11 None
K07F5.7 ENSEMBL cdna:known chromosome:CEL140:IV:9847697:9848148:-1 gene:K07F5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004272 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9847702-9848154(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07F5.7
Entrez Gene 187118 Entrez gene
WormBase CE06122 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94275 Hypothetical protein K07F5.7 [Caenorhabditis elegans] ref|NP_501765.1| K07F5.7 [Caenorhabditis elegans] 3.0E-72
blast CAB02771 Hypothetical protein C25D7.1 [Caenorhabditis elegans] ref|NP_506701.1| C25D7.1 [Caenorhabditis elegans] 8.0E-59
blast CAB02715 Hypothetical protein C01G10.14 [Caenorhabditis elegans] ref|NP_506723.1| C01G10.14 [Caenorhabditis elegans] 5.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 3.2E-25
Sequence
Target Sequence 
>C. ELEGANS:179108_AT
gcattcttactttgccaatacggtttgtcattccaggaagccaaattcccaaatgctggc
ggaaaatcggagcatatggtggtcaactttacctcaaaacgcatggctatcaaagttcga
tgtggcaatgcactatttcgtgttgagccaactcacatgatcattgagcccaacaaatgc
cgccaattgacaatcaatcggatgcctggtccaattcaaaaagacaaggcaattgttcaa
tacctagaaatcgagaaagacgtgcaggatccgaaagctgcattcaaggcagcggacagt
gctggaaccaagattccacacctgaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTCTTACTTTGCCAATACGGTT 665 305 28 Antisense
GCCAATACGGTTTGTCATTCCAGGA 556 275 41 Antisense
GTCATTCCAGGAAGCCAAATTCCCA 232 467 54 Antisense
AATTCCCAAATGCTGGCGGAAAATC 427 175 71 Antisense
AACGCATGGCTATCAAAGTTCGATG 672 145 125 Antisense
AACTCACATGATCATTGAGCCCAAC 73 139 177 Antisense
TCATTGAGCCCAACAAATGCCGCCA 563 617 188 Antisense
GAAAGACGTGCAGGATCCGAAAGCT 371 359 282 Antisense
AGGATCCGAAAGCTGCATTCAAGGC 528 55 293 Antisense
TGCATTCAAGGCAGCGGACAGTGCT 688 577 306 Antisense
GAACCAAGATTCCACACCTGAAGAT 3 345 332 Antisense
Sequence Source Affymetrix Proprietary Database