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[179107_s_at]

Description F54D5.5 /REP_DB=WormBase Gene ID /WP=CE20870 /TR=Q20771 /GB=CAA91332.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 60      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 76.1
(1.5)
P 		87.6
(2.3)
P 		96.8
(3)
A 		12.7
(-3)
A 		84
B 89.3
(2.2)
P 		101.5
(3)
P 		44.8
(-0.5)
A 		4.8
(-3)
A 		97
C 84.3
(1.6)
P 		87.9
(2.1)
P 		96.2
(3)
P 		43.6
(-3)
A 		53
avr 83.2
(2.2) 		92.3
(3) 		79.3
(1.9) 		20.4
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 125.8
(1.5)
P 		87.9
(-0.1)
P 		55.9
(-1.4)
A 		16.2
(-3)
A 		62.3
(-1.1)
P 		163.1
(3)
P 		147
B 90.9
(-0.8)
P 		91.3
(-0.8)
A 		75
(-1.4)
A 		33.7
(-3)
A 		76.1
(-1.4)
P 		190.3
(3)
P 		157
C 110.3
(-0.2)
P 		104.7
(-0.4)
P 		75.5
(-1.3)
A 		19.6
(-3)
A 		83.8
(-1)
P 		214.6
(3)
P 		195
avr 109
(0.1) 		94.6
(-0.4) 		68.8
(-1.4) 		23.2
(-3) 		74.1
(-1.2) 		189.3
(3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 27.7
(3)
P 		19
(1)
P 		25.3
(2.4)
A 		1.9
(-3)
A 		26
B 28.5
(3)
P 		25.1
(2.3)
P 		10.4
(-0.9)
A 		1
(-3)
A 		28
C 27.9
(1.7)
P 		25.3
(1.1)
P 		33.5
(3)
P 		7.3
(-3)
A 		26
avr 28
(3) 		23.1
(1.8) 		23.1
(1.8) 		3.4
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 23.2
(0.2)
P 		31.2
(1.6)
P 		12.2
(-1.6)
A 		4.1
(-3)
A 		18.8
(-0.5)
P 		39.7
(3)
P 		36
B 31.6
(-0.8)
P 		30.4
(-0.9)
A 		18.2
(-2.1)
A 		8.9
(-3)
A 		30.9
(-0.9)
P 		70.9
(3)
P 		62
C 40.9
(0.3)
P 		32
(-0.5)
P 		19.2
(-1.6)
A 		3.9
(-3)
A 		27.1
(-0.9)
P 		71.8
(3)
P 		68
avr 31.9
(-0.1) 		31.2
(-0.2) 		16.5
(-1.8) 		5.6
(-3) 		25.6
(-0.8) 		60.8
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179107_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3732
Sequence Type Exemplar sequence
Representative Public ID F54D5.5 NCBI
Target Description F54D5.5 /REP_DB=WormBase Gene ID /WP=CE20870 /TR=Q20771 /GB=CAA91332.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027031, NM_001027032
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000004683 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11564456:11566604:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027031 8/11 Cross Hyb Matching Probes None
NM_001027032 8/11 Cross Hyb Matching Probes None
SNAP00000004672 8/11 Cross Hyb Matching Probes None
F54D5.5a.1 8/11 Cross Hyb Matching Probes None
F54D5.5a.2 8/11 Cross Hyb Matching Probes None
F54D5.5b 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11564452-11566016(-) 91.09 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI46602 Hypothetical protein F54D5.5b [Caenorhabditis elegans] ref|NP_001022203.1| F54D5.5b [Caenorhabditis elegans] 0.0
blast CAA91332 Hypothetical protein F54D5.5a [Caenorhabditis elegans] ref|NP_001022202.1| F54D5.5a [Caenorhabditis elegans] 0.0
blast CAE59475 Hypothetical protein CBG02859 [Caenorhabditis briggsae] 1.0E-152
Sequence
Target Sequence 
>C. ELEGANS:179107_S_AT
ctcgaggctttccagaattccggatatgatgcattccaccatctccgtcaaccacaaata
tcaaatcctcagcaatatccacctccattgagcatgggctcctacccttatatgagccaa
tccatgaatgcttctcaccacatgtcatctaacttcatgaatagtgctccaccatcaagc
aacacaccgatgacaatgacaagtggagccggagagtcattgataaatccgtctgatgtc
agcttccttcaaaattcattccttcaaccaacttctcaaggtcttacgggaatgactcca
ccacctggaggattcaaggcaaacggcaaattcggcaaatttgccgcacctctggtgtcc
catttccgtatgatctacagtaaatacagaactttttgcccagaaaaaattggtctcatg
cccacaaactacggagatgatgatcgagatgaagtgaaagactatcgttccgaactttta
atcgaaacttcaagaagtactaaagaagtcgacagcatttctccgtcaagctctgctgac
agccaagtgactctacttgatcattccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGAGGCTTTCCAGAATTCCGGAT 666 231 430 Antisense
CATCTCCGTCAACCACAAATATCAA 134 213 469 Antisense
TATCAAATCCTCAGCAATATCCACC 577 659 488 Antisense
CTGGAGGATTCAAGGCAAACGGCAA 519 241 734 Antisense
GTCCCATTTCCGTATGATCTACAGT 40 475 786 Antisense
GTAAATACAGAACTTTTTGCCCAGA 696 451 809 Antisense
TGCCCACAAACTACGGAGATGATGA 175 585 848 Antisense
GACTATCGTTCCGAACTTTTAATCG 272 369 889 Antisense
AAGAAGTCGACAGCATTTCTCCGTC 601 151 932 Antisense
TCTGCTGACAGCCAAGTGACTCTAC 430 609 961 Antisense
GTGACTCTACTTGATCATTCCACAA 385 483 976 Antisense
Sequence Source Affymetrix Proprietary Database