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[179106_s_at]

Description C17G1.4 /REP_DB=WormBase Gene ID /WP=CE08283 /TR=Q93238 /GB=CAB01670.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 31      4grp_high_8_8 > 20      6grp_highest_nonorm > 70      6grp_total > 26      4grp_total > 20      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 481
(0.3)
P 		414
(-1)
P 		316.9
(-3)
P 		613
(3)
P 		296
B 382.4
(0.9)
P 		422.6
(3)
P 		308.2
(-3)
P 		390.8
(1.3)
P 		114
C 344.5
(-3)
P 		422.8
(-0.9)
P 		353.6
(-2.8)
P 		573
(3)
P 		229
avr 402.6
(-0.7) 		419.8
(-0.2) 		326.2
(-3) 		525.6
(3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 433.1
(2.7)
P 		312.2
(-0.2)
P 		198.7
(-3)
P 		199.7
(-3)
P 		302
(-0.5)
P 		445.9
(3)
P 		247
B 492.3
(3)
P 		416.4
(1.5)
P 		270.7
(-1.3)
P 		224.9
(-2.2)
P 		185.7
(-3)
P 		254.3
(-1.7)
P 		307
C 446.9
(2.7)
P 		463
(3)
P 		226.4
(-2)
P 		335
(0.3)
P 		231.4
(-1.8)
P 		176.3
(-3)
P 		287
avr 457.4
(3) 		397.2
(1.4) 		231.9
(-3) 		253.2
(-2.4) 		239.7
(-2.8) 		292.2
(-1.4) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 175.1
(3)
P 		89.9
(-2.5)
P 		82.9
(-3)
P 		89.7
(-2.6)
P 		92
B 122
(3)
P 		104.4
(0.9)
P 		71.4
(-3)
P 		83.3
(-1.6)
P 		51
C 114
(0.9)
P 		121.6
(2.6)
P 		123.2
(3)
P 		96.6
(-3)
P 		27
avr 137
(3) 		105.3
(-1) 		92.5
(-2.7) 		89.9
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 79.8
(0.2)
P 		111
(3)
P 		43.3
(-3)
P 		50.7
(-2.3)
P 		91.1
(1.2)
P 		108.6
(2.8)
P 		68
B 171.3
(3)
P 		138.6
(1.2)
P 		65.7
(-2.7)
P 		59.6
(-3)
P 		75.5
(-2.1)
P 		94.8
(-1.1)
P 		112
C 165.7
(3)
P 		141.3
(1.6)
P 		57.6
(-3)
P 		67.4
(-2.5)
P 		74.9
(-2)
P 		59
(-2.9)
P 		108
avr 138.9
(3) 		130.3
(2.4) 		55.5
(-3) 		59.2
(-2.7) 		80.5
(-1.2) 		87.5
(-0.7) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179106_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16571
Sequence Type Exemplar sequence
Representative Public ID C17G1.4 NCBI
Target Description C17G1.4 /REP_DB=WormBase Gene ID /WP=CE08283 /TR=Q93238 /GB=CAB01670.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029241(10), NM_001029240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029241 NCBI Caenorhabditis elegans C17G1.4b (C17G1.4) mRNA, complete cds. 10/11 None
NM_001029240 NCBI Caenorhabditis elegans C17G1.4a (C17G1.4) mRNA, complete cds. 11/11 None
SNAP00000020419 ENSEMBL cdna:SNAP chromosome:CEL140:X:9926151:9928984:-1 11/11 None
GENEFINDER00000020426 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9926151:9931382:-1 11/11 None
C17G1.4b ENSEMBL cdna:known chromosome:CEL140:X:9925853:9931390:-1 gene:C17G1.4 11/11 None
C17G1.4a ENSEMBL cdna:known chromosome:CEL140:X:9926151:9931382:-1 gene:C17G1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9926150-9931382(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17G1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01670 Hypothetical protein C17G1.4a [Caenorhabditis elegans] ref|NP_001024411.1| C17G1.4a [Caenorhabditis elegans] 0.0
blast CAH60759 Hypothetical protein C17G1.4b [Caenorhabditis elegans] ref|NP_001024412.1| C17G1.4b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179106_S_AT
tgtcacgcatgggtggttcgggaccatcttctgccggtccaggaggatcccaattaccat
cactttcggcaccaagtctgcagagagccgattcaatgccgcaacttccatctcaacagc
aaccgccaatgggtggcccaatggctaaccacatgggcggtatgcaaccaatgaatggaa
ctccaacagaaggcccgacggtcaacaatattggcctcaacagcaacaacgcagctggcc
tcccgcctctgagtttgagaagccagggcccggatgggagccaaaataatgattttcctg
gaattccatcgacttcttcgtcaaatcaagcacacgcgctgtgcgcgggttgccatcact
tcattatgcccgggtcgtctactctgtcttgtttataccatgactgcaaaaacgtgtatc
atcgagaatgcacacgcatctcgccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCACGCATGGGTGGTTCGGGACC 310 557 2249 Antisense
TCCCAATTACCATCACTTTCGGCAC 625 597 2296 Antisense
CTTTCGGCACCAAGTCTGCAGAGAG 594 223 2311 Antisense
GCAGAGAGCCGATTCAATGCCGCAA 25 313 2328 Antisense
AACAGCAACCGCCAATGGGTGGCCC 214 135 2363 Antisense
TGGGTGGCCCAATGGCTAACCACAT 605 551 2378 Antisense
ATGGAACTCCAACAGAAGGCCCGAC 34 53 2423 Antisense
GACGGTCAACAATATTGGCCTCAAC 3 377 2445 Antisense
CTCCCGCCTCTGAGTTTGAGAAGCC 503 233 2488 Antisense
ATCGACTTCTTCGTCAAATCAAGCA 299 37 2556 Antisense
CGAGAATGCACACGCATCTCGCCAT 553 249 2671 Antisense
Sequence Source Affymetrix Proprietary Database