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[179105_at]

Description C17H1.5 /REP_DB=WormBase Gene ID /WP=CE15627 /TR=O45256 /GB=CAB07169.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.3
(-2.4)
A 		5.4
(-0.7)
A 		7.8
(3)
A 		3.9
(-3)
A 		4
B 4.5
(-0.4)
A 		1.4
(-3)
A 		8.6
(3)
A 		4
(-0.8)
A 		7
C 3.7
(-1.8)
A 		3.2
(-2.3)
A 		2.6
(-3)
A 		7.9
(3)
A 		5
avr 4.2
(-1.2) 		3.3
(-3) 		6.3
(3) 		5.3
(1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9
(1.7)
A 		3.9
(-1.6)
A 		10.1
(2.4)
A 		3.1
(-2.1)
A 		11.1
(3)
A 		1.7
(-3)
A 		9
B 8.9
(3)
A 		3
(-2.9)
A 		3.9
(-2)
A 		8.7
(2.8)
A 		2.9
(-3)
A 		4.9
(-1)
A 		6
C 6.6
(2.8)
A 		4.4
(0.3)
A 		6.8
(3)
A 		2.2
(-2.1)
A 		1.4
(-3)
A 		3.6
(-0.6)
A 		5
avr 8.2
(3) 		3.8
(-2.5) 		6.9
(1.4) 		4.7
(-1.4) 		5.1
(-0.9) 		3.4
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.6
(1.3)
A 		1.2
(-0.4)
A 		2
(3)
A 		0.6
(-3)
A 		1
B 1.4
(0.9)
A 		0.3
(-3)
A 		2
(3)
A 		0.8
(-1.2)
A 		2
C 1.2
(1.5)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.3
(3)
A 		0
avr 1.4
(1.5) 		0.8
(-3) 		1.6
(3) 		0.9
(-2.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.7
(-0.3)
A 		1.4
(-0.9)
A 		2.2
(0.7)
A 		0.8
(-2.2)
A 		3.3
(3)
A 		0.4
(-3)
A 		3
B 3.1
(3)
A 		1
(-2.7)
A 		0.9
(-3)
A 		2.3
(0.8)
A 		1.2
(-2.2)
A 		1.8
(-0.5)
A 		2
C 2.4
(3)
A 		1.3
(-0.3)
A 		1.7
(0.9)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1.2
(-0.6)
A 		2
avr 2.4
(3) 		1.2
(-2.5) 		1.6
(-0.7) 		1.2
(-2.5) 		1.6
(-0.7) 		1.1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179105_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.712
Sequence Type Exemplar sequence
Representative Public ID C17H1.5 NCBI
Target Description C17H1.5 /REP_DB=WormBase Gene ID /WP=CE15627 /TR=O45256 /GB=CAB07169.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060896(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060896 NCBI Caenorhabditis elegans C17H1.5 (C17H1.5) mRNA, complete cds. 11/11 None
SNAP00000005613 ENSEMBL cdna:SNAP chromosome:CEL140:I:13121757:13124554:1 11/11 None
GENEFINDER00000005622 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13121757:13124554:1 11/11 None
C17H1.5 ENSEMBL cdna:known chromosome:CEL140:I:13121757:13124554:1 gene:C17H1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13121687-13124485(+) 91.95 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H1.5
Entrez Gene 182747 Entrez gene
SwissProt O45256 EMBL-EBI
WormBase CE15627 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07169 Hypothetical protein C17H1.5 [Caenorhabditis elegans] ref|NP_493297.1| C17H1.5 [Caenorhabditis elegans] 0.0
blast CAE17682 Hypothetical protein C17H1.9 [Caenorhabditis elegans] ref|NP_001021003.1| C17H1.9 [Caenorhabditis elegans] 3.0E-90
blast CAI79120 Hypothetical protein C17H1.10 [Caenorhabditis elegans] ref|NP_001021002.1| C17H1.10 [Caenorhabditis elegans] 2.0E-72
Sequence
Target Sequence 
>C. ELEGANS:179105_AT
agcagacaatcgagcttgaccttaattggacatatgatgaaaagcattgaaagcggtgat
gctatctcaagtcttttgcaagaaatgaaaacttattgtgaaaacagagatcaatactct
ccaactgacattaaaataatgaagaacatttcggccgacattggaaaacacagagcgaaa
tgcgacttccaaaggcaacagctcataagtaaaattaatctggaaagtaacgcagacccc
caagtggttgatggctgttttgaaatgtcaatgaaaatgaaatgttgcgtggagtcgagt
gacctccgttcagtttgtacaacgttgccccttcttgctgcacaacaggagcatgcccgt
attagtggaattataaacaaaatcggcagtttgaccgataacctggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGACAATCGAGCTTGACCTTAA 232 77 577 Antisense
GATGCTATCTCAAGTCTTTTGCAAG 473 413 634 Antisense
AGATCAATACTCTCCAACTGACATT 207 67 684 Antisense
GAAGAACATTTCGGCCGACATTGGA 224 339 717 Antisense
GCGACTTCCAAAGGCAACAGCTCAT 536 289 758 Antisense
GCAGACCCCCAAGTGGTTGATGGCT 701 271 808 Antisense
TGCGTGGAGTCGAGTGACCTCCGTT 549 583 862 Antisense
GTTCAGTTTGTACAACGTTGCCCCT 221 441 884 Antisense
CCCCTTCTTGCTGCACAACAGGAGC 587 261 904 Antisense
ACAGGAGCATGCCCGTATTAGTGGA 524 107 921 Antisense
CGGCAGTTTGACCGATAACCTGGAT 119 243 960 Antisense
Sequence Source Affymetrix Proprietary Database