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[179104_at] 7TM chemoreceptor, srw family

Description T10H4.6 /REP_DB=WormBase Gene ID /WP=CE16391 /TR=O45774 /GB=CAB03333.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 03      6grp_cgc > 19      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 476
1 2 3 4 range
A 25.3
(-2.7)
A 		7
(-3)
A 		28.3
(-2.7)
A 		402.1
(3)
P 		395
B 66.9
(-1.9)
P 		26.3
(-2.7)
A 		7.1
(-3)
A 		340.5
(3)
P 		333
C 44.3
(-2.6)
A 		39.4
(-2.7)
A 		16.8
(-3)
A 		483
(3)
P 		466
avr 45.5
(-2.6) 		24.2
(-2.9) 		17.4
(-3) 		408.5
(3) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 4.8
(-2.8)
A 		32.2
(0.3)
A 		23
(-0.8)
A 		19
(-1.2)
A 		3.3
(-3)
A 		56.6
(3)
A 		53
B 32.7
(0.8)
A 		41.4
(2.1)
A 		6.4
(-3)
A 		29.4
(0.4)
A 		30.9
(0.6)
A 		47.5
(3)
A 		41
C 5.7
(-2.9)
A 		66.1
(3)
A 		4.8
(-3)
A 		15.9
(-1.9)
A 		15.8
(-1.9)
A 		41.6
(0.6)
A 		61
avr 14.4
(-2.5) 		46.6
(2.7) 		11.4
(-3) 		21.4
(-1.4) 		16.7
(-2.1) 		48.6
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 9.2
(-2.2)
A 		1.5
(-3)
A 		7.4
(-2.4)
A 		58.9
(3)
P 		57
B 21.3
(-1.3)
P 		6.5
(-2.6)
A 		1.6
(-3)
A 		72.6
(3)
P 		71
C 14.7
(-2.3)
A 		11.3
(-2.6)
A 		5.8
(-3)
A 		81.4
(3)
P 		76
avr 15.1
(-2.1) 		6.4
(-2.9) 		4.9
(-3) 		71
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.9
(-3)
A 		11.4
(1.9)
A 		5
(-1.1)
A 		4.8
(-1.2)
A 		1
(-3)
A 		13.8
(3)
A 		13
B 11.4
(0.7)
A 		13.8
(1.6)
A 		1.5
(-3)
A 		7.8
(-0.7)
A 		12.6
(1.1)
A 		17.7
(3)
A 		16
C 2.1
(-2.7)
A 		20.2
(3)
A 		1.2
(-3)
A 		3.2
(-2.4)
A 		5.1
(-1.8)
A 		13.9
(1)
A 		19
avr 4.8
(-1.9) 		15.1
(3) 		2.6
(-3) 		5.3
(-1.7) 		6.2
(-1.3) 		15.1
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179104_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13555
Sequence Type Exemplar sequence
Representative Public ID T10H4.6 NCBI
Target Description T10H4.6 /REP_DB=WormBase Gene ID /WP=CE16391 /TR=O45774 /GB=CAB03333.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074382(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074382 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-17) (srw-17) mRNA, complete cds. 11/11 None
SNAP00000030477 ENSEMBL cdna:SNAP chromosome:CEL140:V:15278118:15279111:-1 11/11 None
GENEFINDER00000030491 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15278108:15280643:-1 9/11 None
T10H4.6 ENSEMBL cdna:known chromosome:CEL140:V:15278118:15279486:-1 gene:T10H4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15278117-15279486(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-17
Ensembl T10H4.6
Entrez Gene 188395 Entrez gene
SwissProt O45774 EMBL-EBI
WormBase CE16391 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03333 Hypothetical protein T10H4.6 [Caenorhabditis elegans] ref|NP_506783.1| Serpentine Receptor, class W family member (srw-17) [Caenorhabditis elegans] 0.0
blast CAB03335 Hypothetical protein T10H4.5 [Caenorhabditis elegans] ref|NP_506782.2| Serpentine Receptor, class W family member (srw-16) [Caenorhabditis elegans] 1.0E-136
blast CAB03333 Hypothetical protein T10H4.6 [Caenorhabditis elegans] ref|NP_506783.1| Serpentine Receptor, class W family member (srw-17) [Caenorhabditis elegans] 1.0E-136
blast CAB03337 Hypothetical protein T10H4.8 [Caenorhabditis elegans] ref|NP_506785.2| Serpentine Receptor, class W family member (srw-19) [Caenorhabditis elegans] 1.0E-132
blast CAB03335 Hypothetical protein T10H4.5 [Caenorhabditis elegans] ref|NP_506782.2| Serpentine Receptor, class W family member (srw-16) [Caenorhabditis elegans] 2.0E-88
blast CAB03333 Hypothetical protein T10H4.6 [Caenorhabditis elegans] ref|NP_506783.1| Serpentine Receptor, class W family member (srw-17) [Caenorhabditis elegans] 2.0E-86
blast CAB03337 Hypothetical protein T10H4.8 [Caenorhabditis elegans] ref|NP_506785.2| Serpentine Receptor, class W family member (srw-19) [Caenorhabditis elegans] 4.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506783.1 6 39-57,64-86,132-154,163-185,232-254,276-298
T10H4.6 6 39-57,64-86,132-154,163-185,232-254,276-298
SNAP00000030477 4 5-27,39-61,107-129,151-173
GENEFINDER00000030491 3 94-116,163-185,207-229
Sequence
Target Sequence 
>C. ELEGANS:179104_AT
cgctggtacccagatgtcttgagtaaggcttgcactgattacgaagaacatcgcaacttg
acccactacgttctggtagttccaaaagctagcttcagcctagtctttaagcgtgaaaaa
ctggaacctttcattcgctttattccagccatcttatatccaatcttaacaatcacatta
ctagttcaactgagaattataaagaaaaaacgagaaagtatgaataagaacttgttgaat
gatcgatcagataatacaacaaagctcattctttttatgactttattctttatgatatcg
gagggcttggaaggtatcggagattatatccttcaaaaaattctagctacccctaactat
caagattcaatggtcgacgtaatatcagcgcttggagtggctcaatatttttatacaaat
ctccgcacattaaatggaatatctcatgcattcatatgttttgcaatgtcctcgcagtat
agggacacagtgaagagaatgctctgttcctcgaaaaagcagcgacgaggacagaatata
ctggtcatctcaacagtgtcggttagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTGGTACCCAGATGTCTTGAGTA 284 245 574 Antisense
CGAAGAACATCGCAACTTGACCCAC 528 253 615 Antisense
GACCCACTACGTTCTGGTAGTTCCA 86 381 633 Antisense
AAAGCTAGCTTCAGCCTAGTCTTTA 682 123 658 Antisense
AACTGGAACCTTTCATTCGCTTTAT 377 143 692 Antisense
TTTCATTCGCTTTATTCCAGCCATC 156 673 702 Antisense
TCCAGCCATCTTATATCCAATCTTA 578 589 717 Antisense
TTCTAGCTACCCCTAACTATCAAGA 513 681 914 Antisense
GTCGACGTAATATCAGCGCTTGGAG 584 471 946 Antisense
AAGAGAATGCTCTGTTCCTCGAAAA 156 155 1066 Antisense
GGTCATCTCAACAGTGTCGGTTAGC 69 503 1116 Antisense
Sequence Source Affymetrix Proprietary Database