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[179103_at]

Description F19H6.6 /REP_DB=WormBase Gene ID /WP=CE03237 /TR=Q19603 /GB=CAA92166.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 46      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 340
(3)
P 		184
(-0.6)
P 		83.3
(-3)
P 		128.7
(-1.9)
A 		257
B 315.8
(3)
P 		104.1
(-1.2)
P 		99.5
(-1.3)
P 		13.9
(-3)
A 		302
C 313
(3)
P 		99
(-2.6)
A 		111.7
(-2.2)
P 		82.8
(-3)
A 		230
avr 322.9
(3) 		129
(-1.7) 		98.2
(-2.4) 		75.1
(-3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 186.7
(3)
P 		119
(-0)
M 		53.2
(-3)
A 		97.1
(-1)
A 		94.1
(-1.2)
A 		62.8
(-2.6)
A 		134
B 123.1
(3)
P 		68.7
(0.2)
M 		89
(1.2)
A 		83.9
(1)
A 		84.4
(1)
A 		7
(-3)
A 		116
C 122.3
(3)
P 		120.1
(2.9)
M 		109.3
(2.1)
P 		31.8
(-3)
A 		68.6
(-0.6)
A 		44.4
(-2.2)
A 		91
avr 144
(3) 		102.6
(0.7) 		83.8
(-0.4) 		70.9
(-1.1) 		82.4
(-0.5) 		38.1
(-3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 123.8
(3)
P 		39.9
(-1.8)
P 		21.8
(-2.8)
P 		18.8
(-3)
A 		105
B 100.7
(3)
P 		25.7
(-1.6)
P 		23
(-1.8)
P 		3
(-3)
A 		98
C 103.6
(3)
P 		28.5
(-2)
A 		38.9
(-1.3)
P 		14
(-3)
A 		90
avr 109.4
(3) 		31.4
(-1.8) 		27.9
(-2) 		11.9
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 34.4
(1.5)
P 		42.3
(3)
M 		11.6
(-3)
A 		24.6
(-0.5)
A 		28.4
(0.3)
A 		15.3
(-2.3)
A 		31
B 42.8
(3)
P 		22.9
(0)
M 		21.6
(-0.2)
A 		22.2
(-0.1)
A 		34.3
(1.7)
A 		2.6
(-3)
A 		40
C 45.3
(3)
P 		36.7
(1.7)
M 		27.8
(0.3)
P 		6.4
(-3)
A 		22.2
(-0.6)
A 		14.9
(-1.7)
A 		39
avr 40.8
(3) 		34
(1.6) 		20.3
(-1.1) 		17.7
(-1.6) 		28.3
(0.5) 		10.9
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179103_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17243
Sequence Type Exemplar sequence
Representative Public ID F19H6.6 NCBI
Target Description F19H6.6 /REP_DB=WormBase Gene ID /WP=CE03237 /TR=Q19603 /GB=CAA92166.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077674(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077674 NCBI Caenorhabditis elegans F19H6.6 (F19H6.6) mRNA, complete cds. 11/11 None
SNAP00000003011 ENSEMBL cdna:SNAP chromosome:CEL140:X:12362382:12363023:1 11/11 None
F19H6.6 ENSEMBL cdna:known chromosome:CEL140:X:12362382:12363023:1 gene:F19H6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12362381-12363023(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19H6.6
Entrez Gene 184700 Entrez gene
SwissProt Q19603 EMBL-EBI
WormBase CE03237 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92166 Hypothetical protein F19H6.6 [Caenorhabditis elegans] ref|NP_510075.1| F19H6.6 [Caenorhabditis elegans] 2.0E-81
Sequence
Target Sequence 
>C. ELEGANS:179103_AT
gcctacaccgtccaaaatcgtatgtgacaaagtgactaaacaaattgaaattccaaagaa
tctgacaatgtctgaaattcaaatgctgacaccgccatttatgaaatccgcgccaaggcc
gaagattcgcattcaaccaccaattatatcccctgttcaacatacgccgagtgaaagatt
tgacatctgggaaaattcaagcttccagagctcgcttcatcctcctgagccaacactaca
ttctggaaattggtcatctgtgtcaaattccacacctatcccaattcctaaagtaaccca
agttaagaatgatttcgggaaaacaaagagacgaacaaagaaatcaatcaacccaaaaag
agtcgcagcacaaatcaaactgaaatatcaaaactcacaacttcagtcacaaacccagac
atctcaactgccttcaagtttctctaatccaccgtattatcctcaagaccctgcgcctat
aactcatcaacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTACACCGTCCAAAATCGTATGT 644 279 33 Antisense
GAAATTCAAATGCTGACACCGCCAT 448 363 106 Antisense
ATCCGCGCCAAGGCCGAAGATTCGC 479 37 138 Antisense
TTCAACCACCAATTATATCCCCTGT 94 685 164 Antisense
TTATATCCCCTGTTCAACATACGCC 419 679 176 Antisense
AATTCAAGCTTCCAGAGCTCGCTTC 389 175 226 Antisense
CTCCTGAGCCAACACTACATTCTGG 381 235 254 Antisense
GTCACAAACCCAGACATCTCAACTG 373 465 438 Antisense
TGCCTTCAAGTTTCTCTAATCCACC 579 585 461 Antisense
TAATCCACCGTATTATCCTCAAGAC 191 637 477 Antisense
CCTGCGCCTATAACTCATCAACAAA 154 267 502 Antisense
Sequence Source Affymetrix Proprietary Database