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[179102_at]

Description T28C6.8 /REP_DB=WormBase Gene ID /WP=CE26012 /TR=Q9XVW9 /GB=CAA90999.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 74      6grp_total > 63      4grp_total > 03      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 461
1 2 3 4 range
A 410
(-1.8)
P 		317.4
(-3)
P 		358.7
(-2.5)
P 		773.5
(3)
P 		456
B 451.4
(-1.8)
P 		402.8
(-2.6)
P 		373.2
(-3)
P 		769.3
(3)
P 		396
C 369.3
(-3)
P 		409.2
(-2.4)
P 		412.5
(-2.4)
P 		777.9
(3)
P 		409
avr 410.2
(-2.5) 		376.5
(-3) 		381.5
(-2.9) 		773.6
(3) 		397

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 661.8
(-0.8)
P 		502.3
(-3)
P 		931.6
(3)
P 		835.6
(1.7)
P 		718.5
(0)
P 		524.6
(-2.7)
P 		429
B 676.4
(-0.9)
P 		573.3
(-3)
P 		861.9
(3)
P 		834.5
(2.4)
P 		702
(-0.3)
P 		631.7
(-1.8)
P 		289
C 605.4
(-3)
P 		612.4
(-2.9)
P 		780.5
(0)
P 		955.5
(3)
P 		653.1
(-2.2)
P 		840.6
(1)
P 		350
avr 647.9
(-1.4) 		562.7
(-3) 		858
(2.7) 		875.2
(3) 		691.2
(-0.5) 		665.6
(-1) 		313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 149.3
(3)
P 		68.9
(-3)
P 		93.8
(-1.1)
P 		113.2
(0.3)
P 		80
B 144
(1.5)
P 		99.5
(-2)
P 		86.5
(-3)
P 		163.9
(3)
P 		77
C 122.3
(-1.9)
P 		117.7
(-3)
P 		143.8
(3)
P 		131.2
(0.1)
P 		26
avr 138.5
(3) 		95.4
(-3) 		108
(-1.2) 		136.1
(2.7) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 122
(-3)
P 		178.6
(0.6)
P 		202.9
(2.1)
P 		211.9
(2.7)
P 		216.8
(3)
P 		127.7
(-2.6)
P 		95
B 235.3
(-0.2)
P 		190.8
(-3)
P 		209.3
(-1.8)
P 		221
(-1.1)
P 		285.2
(3)
P 		235.6
(-0.2)
P 		94
C 224.4
(-0.6)
P 		186.9
(-3)
P 		198.6
(-2.3)
P 		192.2
(-2.7)
P 		211.3
(-1.5)
P 		281.4
(3)
P 		95
avr 193.9
(-2) 		185.4
(-3) 		203.6
(-0.9) 		208.4
(-0.4) 		237.8
(3) 		214.9
(0.4) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9396
Sequence Type Exemplar sequence
Representative Public ID T28C6.8 NCBI
Target Description T28C6.8 /REP_DB=WormBase Gene ID /WP=CE26012 /TR=Q9XVW9 /GB=CAA90999.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069128(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069128 NCBI Caenorhabditis elegans T28C6.8 (T28C6.8) mRNA, complete cds. 11/11 None
GENEFINDER00000005662 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8829923:8830423:-1 11/11 None
T28C6.8 ENSEMBL cdna:known chromosome:CEL140:IV:8829602:8830649:-1 gene:T28C6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005657 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8829928-8830429(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28C6.8
Entrez Gene 177696 Entrez gene
SwissProt Q9XVW9 EMBL-EBI
WormBase CE26012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90999 Hypothetical protein T28C6.8 [Caenorhabditis elegans] ref|NP_501529.1| T28C6.8 [Caenorhabditis elegans] 2.0E-57
blast CAE69441 Hypothetical protein CBG15628 [Caenorhabditis briggsae] 2.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501529.1 1 23-42
T28C6.8 1 23-42
GENEFINDER00000005662 1 23-42
Sequence
Target Sequence 
>C. ELEGANS:179102_AT
tgtcatccactacatcttctaatctgtcatgtccggcttgcactcagaaaaaagtgaaaa
gccgtttcagttggcgagcaattttatacgcaattttttgctttccgtgtggaatctact
gctgcatgaaacggaaaacatactattgcacacaatgtcaatgtgatgtggttaaacgta
ctgaaacccgtgctattttaccaagaactcccggattgggctacaacttccgtttgtacg
aatctacaaaaacggctcttccagctagttttgctgcatatcgtaatccggcaatgacag
catcatccacagattctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCATCCACTACATCTTCTAATCT 319 559 14 Antisense
CATCTTCTAATCTGTCATGTCCGGC 380 213 26 Antisense
ATGTCCGGCTTGCACTCAGAAAAAA 410 47 42 Antisense
AAGCCGTTTCAGTTGGCGAGCAATT 519 149 72 Antisense
CGCAATTTTTTGCTTTCCGTGTGGA 435 251 102 Antisense
TTCCGTGTGGAATCTACTGCTGCAT 554 699 116 Antisense
CGTGCTATTTTACCAAGAACTCCCG 318 243 202 Antisense
GAACTCCCGGATTGGGCTACAACTT 303 349 218 Antisense
CGGCTCTTCCAGCTAGTTTTGCTGC 407 241 266 Antisense
GTTTTGCTGCATATCGTAATCCGGC 697 447 281 Antisense
GACAGCATCATCCACAGATTCTACA 230 369 309 Antisense
Sequence Source Affymetrix Proprietary Database