[Home] | [Total List]

[179101_at]

Description R148.3 /REP_DB=WormBase Gene ID /WP=CE12852 /TR=O17267 /GB=AAB71038.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 02      4grp_high_8_8 > 45      6grp_highest_nonorm > 60      6grp_total > 16      4grp_total > 50      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 217.8
(-3)
P 		241.3
(1.9)
P 		246.6
(3)
P 		226.2
(-1.3)
P 		29
B 229.6
(-2.7)
P 		333.3
(2.6)
P 		341.1
(3)
P 		222.7
(-3)
P 		118
C 164.8
(-3)
P 		385.4
(3)
P 		267.7
(-0.2)
P 		184.7
(-2.5)
P 		221
avr 204.1
(-3) 		320
(3) 		285.1
(1.2) 		211.2
(-2.6) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 621
1 2 3 4 5 6 range
A 753.5
(3)
P 		273.7
(-1.6)
P 		219.4
(-2.2)
P 		132.5
(-3)
P 		280.4
(-1.6)
P 		269.5
(-1.7)
P 		621
B 687.4
(3)
P 		527.3
(1)
P 		357.5
(-1)
P 		356.9
(-1)
P 		195.3
(-3)
P 		274.3
(-2)
P 		492
C 457.7
(2.9)
P 		464.2
(3)
P 		272.5
(-1)
P 		311.3
(-0.2)
P 		200
(-2.5)
P 		178.2
(-3)
P 		286
avr 632.9
(3) 		421.7
(-0.1) 		283.1
(-2.1) 		266.9
(-2.4) 		225.2
(-3) 		240.7
(-2.8) 		408
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 79.3
(3)
P 		52.4
(-0.5)
P 		64.5
(1.1)
P 		33.1
(-3)
P 		46
B 73.2
(1.4)
P 		82.3
(3)
P 		79
(2.4)
P 		47.5
(-3)
P 		35
C 54.6
(-1.2)
P 		110.8
(3)
P 		93.3
(1.7)
P 		31.1
(-3)
P 		80
avr 69
(1.3) 		81.8
(3) 		78.9
(2.6) 		37.2
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 138.9
(3)
P 		97.4
(0.6)
P 		47.8
(-2.2)
P 		33.6
(-3)
P 		84.6
(-0.1)
P 		65.6
(-1.2)
P 		105
B 239.2
(3)
P 		175.5
(0.6)
P 		86.8
(-2.7)
P 		94.5
(-2.4)
P 		79.4
(-3)
P 		102.3
(-2.1)
P 		160
C 169.6
(3)
P 		141.6
(1.5)
P 		69.4
(-2.5)
P 		62.6
(-2.8)
P 		64.7
(-2.7)
P 		59.6
(-3)
P 		110
avr 182.6
(3) 		138.2
(0.8) 		68
(-2.8) 		63.6
(-3) 		76.2
(-2.4) 		75.8
(-2.4) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7983
Sequence Type Exemplar sequence
Representative Public ID R148.3 NCBI
Target Description R148.3 /REP_DB=WormBase Gene ID /WP=CE12852 /TR=O17267 /GB=AAB71038.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181958(11), NM_065266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181958 NCBI Caenorhabditis elegans R148.3b (R148.3) mRNA, complete cds. 11/11 None
NM_065266 NCBI Caenorhabditis elegans R148.3a (R148.3) mRNA, complete cds. 11/11 None
SNAP00000030364 ENSEMBL cdna:SNAP chromosome:CEL140:III:3166274:3180754:1 11/11 None
GENEFINDER00000030373 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3175370:3180917:1 11/11 None
R148.3a ENSEMBL cdna:known chromosome:CEL140:III:3175328:3183504:1 gene:R148.3 11/11 None
R148.3b ENSEMBL cdna:known chromosome:CEL140:III:3175370:3183596:1 gene:R148.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3175369-3180098(+) 97.13 100.0
Public Domain and Genome References
Ensembl R148.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN65300 Hypothetical protein R148.3b [Caenorhabditis elegans] ref|NP_871687.1| R148.3b [Caenorhabditis elegans] 0.0
blast AAB71038 Hypothetical protein R148.3a [Caenorhabditis elegans] ref|NP_497667.1| R148.3a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.389999985694885
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.80000019073486
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.0
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 3.09999990463257
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030364 4 498-520,540-562,577-599,1151-1170
Sequence
Target Sequence 
>C. ELEGANS:179101_AT
aatggctggaggtgtcacgagctcgcggagcattccagatcgccttgtttctccacttca
ggagcctatttgggatgagcccgagccagcactgcagagagttgttttaccattggatgg
atattcatcgatgagaagacgatcgacacgtcggagccagttgccgtttggagccgagtc
accgtcggatcaggagaagaagcaggcggcgccgagtcatcggagacgatcgagaagtca
tggaaggcagccacccagttttcatgatccctattcaatgaatccatatctgcccggctc
atcggattcgagctttatgagcacatctcagccacaattccttccgcttaaccgtcaaca
cagtcgaagtggacatttgatgagcaattcggcgaatggaccatattcatcgggtggctc
aaacggtggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCTGGAGGTGTCACGAGCTCG 334 161 2871 Antisense
CTTGTTTCTCCACTTCAGGAGCCTA 503 217 2914 Antisense
GACGATCGACACGTCGGAGCCAGTT 396 379 3008 Antisense
GCCGAGTCACCGTCGGATCAGGAGA 18 283 3043 Antisense
GGCGCCGAGTCATCGGAGACGATCG 690 541 3078 Antisense
AGTCATGGAAGGCAGCCACCCAGTT 158 59 3106 Antisense
CCCAGTTTTCATGATCCCTATTCAA 351 257 3124 Antisense
TTCAATGAATCCATATCTGCCCGGC 501 685 3144 Antisense
ATGAGCACATCTCAGCCACAATTCC 656 45 3187 Antisense
TCCGCTTAACCGTCAACACAGTCGA 583 595 3213 Antisense
TCATCGGGTGGCTCAAACGGTGGAC 77 607 3277 Antisense
Sequence Source Affymetrix Proprietary Database