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[179100_at]

Description T26E3.5 /REP_DB=WormBase Gene ID /WP=CE14192 /TR=O45826 /GB=CAB04831.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 44      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 52.9
(0.5)
A 		84.9
(3)
A 		20.6
(-2.1)
A 		9.4
(-3)
A 		76
B 61.9
(0.4)
A 		96.1
(3)
A 		61.8
(0.4)
A 		18.4
(-3)
A 		78
C 53.5
(-2)
A 		109.2
(3)
A 		44.3
(-2.8)
A 		42.4
(-3)
A 		67
avr 56.1
(-0.3) 		96.7
(3) 		42.2
(-1.5) 		23.4
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 67.5
(0.6)
A 		36.5
(-1.3)
A 		67.5
(0.6)
A 		9
(-3)
A 		78.6
(1.2)
A 		107.8
(3)
P 		99
B 68.7
(3)
A 		60
(1.7)
A 		29.7
(-3)
A 		38.4
(-1.7)
A 		55.1
(0.9)
A 		57.1
(1.2)
A 		39
C 12
(-3)
A 		43.9
(-0.5)
A 		52
(0.1)
A 		18.4
(-2.5)
A 		22.4
(-2.2)
A 		90
(3)
A 		78
avr 49.4
(-0.4) 		46.8
(-0.6) 		49.7
(-0.4) 		21.9
(-3) 		52
(-0.1) 		85
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 19.3
(3)
A 		18.4
(2.7)
A 		5.4
(-1.7)
A 		1.4
(-3)
A 		18
B 19.7
(1.8)
A 		23.7
(3)
A 		14.3
(0.2)
A 		3.9
(-3)
A 		20
C 17.7
(-0.4)
A 		31.4
(3)
A 		15.4
(-1)
A 		7.2
(-3)
A 		24
avr 18.9
(1.3) 		24.5
(3) 		11.7
(-0.8) 		4.2
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 12.5
(-0.4)
A 		13
(-0.3)
A 		14.7
(0.1)
A 		2.3
(-3)
A 		23.7
(2.4)
A 		26.2
(3)
P 		24
B 23.9
(3)
A 		20
(1.6)
A 		7.2
(-3)
A 		10.2
(-1.9)
A 		22.4
(2.5)
A 		21.3
(2.1)
A 		17
C 4.5
(-2.8)
A 		13.4
(-0.8)
A 		13.2
(-0.8)
A 		3.7
(-3)
A 		7.2
(-2.2)
A 		30.1
(3)
A 		26
avr 13.6
(-0.6) 		15.5
(-0) 		11.7
(-1.2) 		5.4
(-3) 		17.8
(0.6) 		25.9
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1938
Sequence Type Exemplar sequence
Representative Public ID T26E3.5 NCBI
Target Description T26E3.5 /REP_DB=WormBase Gene ID /WP=CE14192 /TR=O45826 /GB=CAB04831.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060805 NCBI Caenorhabditis elegans T26E3.5 (T26E3.5) mRNA, complete cds. 11/11 None
SNAP00000034747 ENSEMBL cdna:SNAP chromosome:CEL140:I:12671059:12671844:-1 11/11 None
GENEFINDER00000034756 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12671059:12671844:-1 11/11 None
T26E3.5 ENSEMBL cdna:known chromosome:CEL140:I:12671243:12671844:-1 gene:T26E3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12671173-12671775(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E3.5
Entrez Gene 188923 Entrez gene
SwissProt O45826 EMBL-EBI
WormBase CE14192 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04831 Hypothetical protein T26E3.5 [Caenorhabditis elegans] ref|NP_493206.1| T26E3.5 [Caenorhabditis elegans] 1.0E-85
blast CAB04831 Hypothetical protein T26E3.5 [Caenorhabditis elegans] ref|NP_493206.1| T26E3.5 [Caenorhabditis elegans] 2.0E-45
blast CAB60352 Hypothetical protein Y46G5A.7 [Caenorhabditis elegans] ref|NP_496713.2| Y46G5A.7 [Caenorhabditis elegans] 7.0E-20
blast CAB04905 Hypothetical protein W04A8.5 [Caenorhabditis elegans] ref|NP_493424.1| W04A8.5 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:179100_AT
gcactcaccgctgtaacggatcacatgaacattttagaaattttttcccttcttgccact
tcacaaaactcaaaccacctcgtttccaagtccatcagagcttttacaatgttgaagaga
gcctcaagaaaggattacttcactgcttcgattattgcctgtgaagatcttatcgaaatc
attctaagttttcaaggataccaactccctatttatgtggggaatgaactttccgaaaaa
ggaagaagacgtccgacgaattgtagaaatgattcgctcaattcgtcaacggttctacat
attctgcttcacaaaccaaagcatatcggaggagttgttcgagattattctgaaactacg
ctcatgcaagttgcacatagatgtgacaaatccccacaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTCACCGCTGTAACGGATCACA 332 315 58 Antisense
CTTCTTGCCACTTCACAAAACTCAA 322 221 106 Antisense
TTCACAAAACTCAAACCACCTCGTT 412 685 117 Antisense
CCTCGTTTCCAAGTCCATCAGAGCT 152 267 135 Antisense
GAAAGGATTACTTCACTGCTTCGAT 319 361 185 Antisense
CACTGCTTCGATTATTGCCTGTGAA 289 199 198 Antisense
AAGGATACCAACTCCCTATTTATGT 234 161 251 Antisense
GATTCGCTCAATTCGTCAACGGTTC 514 433 328 Antisense
AACGGTTCTACATATTCTGCTTCAC 6 145 345 Antisense
GATTATTCTGAAACTACGCTCATGC 385 429 400 Antisense
TAGATGTGACAAATCCCCACAGGAT 99 653 435 Antisense
Sequence Source Affymetrix Proprietary Database