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[179099_at]

Description M151.6 /REP_DB=WormBase Gene ID /WP=CE12444 /TR=O17122 /GB=AAB70377.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 43      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.6
(-3)
A 		6.1
(3)
A 		2.1
(-2.3)
A 		2.7
(-1.5)
A 		5
B 2
(-3)
A 		2.7
(3)
A 		2
(-3)
A 		2.2
(-1.3)
A 		1
C 1.8
(-3)
A 		5.5
(3)
A 		2.3
(-2.2)
A 		1.9
(-2.8)
A 		4
avr 1.8
(-3) 		4.8
(3) 		2.1
(-2.4) 		2.3
(-2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.9
(-2.3)
A 		2.4
(-2.8)
A 		2.6
(-2.7)
A 		9.9
(-0.4)
A 		1.6
(-3)
A 		20.9
(3)
A 		19
B 1.9
(-3)
A 		2.6
(-2.9)
A 		2.1
(-3)
A 		2.8
(-2.8)
A 		2.4
(-2.9)
A 		36.5
(3)
A 		35
C 0.5
(-3)
A 		4.4
(2.3)
A 		4.9
(3)
A 		2.9
(0.3)
A 		3.3
(0.8)
A 		3.4
(1)
A 		4
avr 2.1
(-3) 		3.1
(-2.7) 		3.2
(-2.6) 		5.2
(-2) 		2.4
(-2.9) 		20.3
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.6
(-1.7)
A 		1.3
(3)
A 		0.6
(-1.7)
A 		0.4
(-3)
A 		1
B 0.6
(0)
A 		0.7
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0
C 0.6
(-1.6)
A 		1.6
(3)
A 		0.8
(-0.7)
A 		0.3
(-3)
A 		1
avr 0.6
(-1.5) 		1.2
(3) 		0.6
(-1.5) 		0.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.7
(-2.7)
A 		0.8
(-2.6)
A 		0.6
(-2.9)
A 		2.5
(-0.4)
A 		0.5
(-3)
A 		5.1
(3)
A 		5
B 0.7
(-2.9)
A 		0.9
(-2.8)
A 		0.5
(-3)
A 		0.8
(-2.9)
A 		1
(-2.8)
A 		13.6
(3)
A 		13
C 0.2
(-3)
A 		1.3
(3)
A 		1.3
(3)
A 		0.6
(-0.8)
A 		1.1
(1.9)
A 		1.1
(1.9)
A 		1
avr 0.5
(-3) 		1
(-2.5) 		0.8
(-2.7) 		1.3
(-2.2) 		0.9
(-2.6) 		6.6
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4885
Sequence Type Exemplar sequence
Representative Public ID M151.6 NCBI
Target Description M151.6 /REP_DB=WormBase Gene ID /WP=CE12444 /TR=O17122 /GB=AAB70377.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027092 NCBI Caenorhabditis elegans M151.8 (M151.8) mRNA, complete cds. 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3645419-3648592(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565241 Entrez gene
WormBase CE38623 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022263 M151.8 [Caenorhabditis elegans] gb|AAY43996.1| Hypothetical protein M151.8 [Caenorhabditis elegans] 1.0E-156
blast T32302 hypothetical protein M151.6 - Caenorhabditis elegans 1.0E-140
blast NP_494601 M151.5 [Caenorhabditis elegans] gb|AAB70376.1| Hypothetical protein M151.5 [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-7
Sequence
Target Sequence 
>C. ELEGANS:179099_AT
aattgttcacagtttgttacacaggattcgcagttttcgagcaaagatctaaacctattg
ctgaagcattggctcagaggcttaaccccccgtcttctgaatatcgttatgctcttttcg
gaggccaatgaaaatcgtttggtcgaaactatcatttttgacggtatcattgattacatt
gcattgaaattgcacgggttgaaagagttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTTCACAGTTTGTTACACAGG 14 179 1549 Antisense
TGTTACACAGGATTCGCAGTTTTCG 267 561 1563 Antisense
GGATTCGCAGTTTTCGAGCAAAGAT 401 509 1572 Antisense
AAAGATCTAAACCTATTGCTGAAGC 90 123 1591 Antisense
AAACCTATTGCTGAAGCATTGGCTC 32 127 1599 Antisense
AGCATTGGCTCAGAGGCTTAACCCC 579 75 1613 Antisense
CCCCCGTCTTCTGAATATCGTTATG 454 259 1635 Antisense
CTGAATATCGTTATGCTCTTTTCGG 572 237 1645 Antisense
TATGCTCTTTTCGGAGGCCAATGAA 600 657 1656 Antisense
TCATTGATTACATTGCATTGAAATT 201 303 1715 Antisense
AAATTGCACGGGTTGAAAGAGTTCA 260 113 1735 Antisense
Sequence Source Affymetrix Proprietary Database