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[179098_at]

Description T19C9.8 /REP_DB=WormBase Gene ID /WP=CE16425 /TR=O45792 /GB=CAB07486.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      6grp_highest_nonorm > 90      6grp_total > 81      4grp_total > 42      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 64.3
(-2.2)
P 		153
(3)
P 		120.9
(1.1)
P 		50.5
(-3)
A 		103
B 48
(-3)
P 		85
(3)
P 		63
(-0.6)
P 		64.7
(-0.3)
A 		37
C 47.3
(-3)
P 		126.1
(3)
P 		99.2
(1)
P 		85
(-0.1)
M 		79
avr 53.2
(-3) 		121.4
(3) 		94.4
(0.6) 		66.7
(-1.8) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 118.9
(-1.6)
P 		90.2
(-3)
P 		120
(-1.6)
P 		214.7
(3)
P 		162.6
(0.5)
P 		96.1
(-2.7)
P 		125
B 110.6
(-0.4)
P 		54.8
(-3)
P 		156.2
(1.7)
P 		183.2
(3)
P 		170
(2.4)
P 		68.4
(-2.4)
P 		128
C 118.8
(-0.9)
P 		67
(-3)
P 		175.2
(1.4)
P 		214
(3)
P 		139.7
(-0)
P 		74.1
(-2.7)
P 		147
avr 116.1
(-1) 		70.7
(-3) 		150.5
(0.6) 		204
(3) 		157.4
(0.9) 		79.5
(-2.6) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 23.4
(0.7)
P 		33.2
(3)
P 		31.6
(2.6)
P 		7.4
(-3)
A 		26
B 15.3
(-1.8)
P 		21
(3)
P 		14.6
(-2.3)
P 		13.8
(-3)
A 		7
C 15.6
(-2.6)
P 		36.3
(3)
P 		34.6
(2.5)
P 		14.3
(-3)
M 		22
avr 18.1
(-0.9) 		30.2
(3) 		26.9
(1.9) 		11.8
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 21.9
(-3)
P 		32.1
(-1.1)
P 		26.1
(-2.2)
P 		54.5
(3)
P 		49.1
(2)
P 		23.4
(-2.7)
P 		33
B 38.5
(-0.6)
P 		18.2
(-3)
P 		37.9
(-0.7)
P 		48.5
(0.6)
P 		69.1
(3)
P 		25.5
(-2.1)
P 		51
C 44
(2.7)
P 		20.5
(-3)
P 		44.6
(2.9)
P 		43
(2.5)
P 		45.2
(3)
P 		24.8
(-2)
P 		25
avr 34.8
(-0.8) 		23.6
(-3) 		36.2
(-0.6) 		48.7
(1.9) 		54.5
(3) 		24.6
(-2.8) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179098_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13868
Sequence Type Exemplar sequence
Representative Public ID T19C9.8 NCBI
Target Description T19C9.8 /REP_DB=WormBase Gene ID /WP=CE16425 /TR=O45792 /GB=CAB07486.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074966 NCBI Caenorhabditis elegans T19C9.8 (T19C9.8) mRNA, complete cds. 11/11 None
SNAP00000010319 ENSEMBL cdna:SNAP chromosome:CEL140:V:17241682:17243233:1 11/11 None
GENEFINDER00000010322 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17239583:17243209:1 11/11 None
T19C9.8 ENSEMBL cdna:known chromosome:CEL140:V:17240998:17243233:1 gene:T19C9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17240997-17243233(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19C9.8
Entrez Gene 180142 Entrez gene
SwissProt O45792 EMBL-EBI
WormBase CE16425 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07486 Hypothetical protein T19C9.8 [Caenorhabditis elegans] ref|NP_507367.1| T19C9.8 [Caenorhabditis elegans] 0.0
blast CAB02803 Hypothetical protein C29F3.7 [Caenorhabditis elegans] ref|NP_741643.2| C29F3.7 [Caenorhabditis elegans] 1.0E-40
blast CAB02803 Hypothetical protein C29F3.7 [Caenorhabditis elegans] ref|NP_741643.2| C29F3.7 [Caenorhabditis elegans] 9.0E-40
blast CAB02803 Hypothetical protein C29F3.7 [Caenorhabditis elegans] ref|NP_741643.2| C29F3.7 [Caenorhabditis elegans] 3.0E-39
blast CAB03505 Hypothetical protein ZK1037.6 [Caenorhabditis elegans] ref|NP_506799.1| ZK1037.6 [Caenorhabditis elegans] 3.0E-36
blast CAB03505 Hypothetical protein ZK1037.6 [Caenorhabditis elegans] ref|NP_506799.1| ZK1037.6 [Caenorhabditis elegans] 3.0E-35
Sequence
Target Sequence 
>C. ELEGANS:179098_AT
ggcaaaccgtgtagctagttaccatgctggaaattgctcaatgaatctaccccaaatgtt
gttcggtgatttcactacgtttttgtacaccggtaccaaatccaagttagtcttaacaca
tgactataattcattctacgaaatgaatggattaatcggcaggaaggcatttatggcttc
gtacttttatggcacagattcgtcccatcaaggtattgtagctgacttctctgtgcaacg
gaacagtggcaccagttttagagtttctatttggtcagacaattttaatgagcagactag
tcagctgataatcgaatggccaggctacgacaaatattcttctaatatgtacaatataac
aaatttatcaccaaccggaaattatacatttgaaattacaagttactcgatgagcgtgga
atattatttcgactctgaaaacacaacgtccaagggaatatacatagatgttgaactcat
taaaggatcttccgctttgtattatatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAAACCGTGTAGCTAGTTACCAT 459 535 675 Antisense
GAAATTGCTCAATGAATCTACCCCA 407 363 704 Antisense
ATCTACCCCAAATGTTGTTCGGTGA 628 1 719 Antisense
GATTTCACTACGTTTTTGTACACCG 298 429 742 Antisense
TGTACACCGGTACCAAATCCAAGTT 28 557 758 Antisense
ATGGCTTCGTACTTTTATGGCACAG 100 53 847 Antisense
ATGGCACAGATTCGTCCCATCAAGG 46 53 863 Antisense
GGTATTGTAGCTGACTTCTCTGTGC 387 505 886 Antisense
GCAACGGAACAGTGGCACCAGTTTT 160 321 909 Antisense
GGCCAGGCTACGACAAATATTCTTC 222 543 992 Antisense
GGATCTTCCGCTTTGTATTATATCT 462 511 1159 Antisense
Sequence Source Affymetrix Proprietary Database