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[179097_at] 7TM receptor, srx family

Description T10C6.3 /REP_DB=WormBase Gene ID /WP=CE16378 /TR=O45767 /GB=CAB07660.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 06      6grp_cgc > 09      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 21.9
(-2.6)
A 		20.6
(-3)
A 		26.4
(-1.4)
A 		42.3
(3)
A 		22
B 52.9
(1.3)
A 		31.7
(-2.2)
A 		26.7
(-3)
A 		63.2
(3)
A 		37
C 48.3
(3)
A 		2.4
(-3)
A 		16.7
(-1.1)
A 		46.4
(2.8)
A 		46
avr 41
(1.2) 		18.2
(-3) 		23.3
(-2.1) 		50.6
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 57.3
(3)
A 		19
(-2.5)
A 		15.4
(-3)
A 		46.4
(1.4)
A 		16.3
(-2.9)
A 		45.8
(1.4)
A 		42
B 42.5
(3)
A 		24.4
(-0)
A 		6.5
(-3)
A 		21.5
(-0.5)
A 		42.1
(2.9)
A 		16.6
(-1.3)
A 		36
C 27
(0.1)
A 		30.6
(0.6)
A 		8.4
(-2.3)
A 		21.7
(-0.6)
A 		3
(-3)
A 		49.5
(3)
A 		47
avr 42.3
(3) 		24.7
(-0.3) 		10.1
(-3) 		29.9
(0.7) 		20.5
(-1.1) 		37.3
(2.1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8
(3)
A 		4.5
(-3)
A 		6.9
(1.1)
A 		6.2
(-0.1)
A 		4
B 16.9
(3)
A 		7.8
(-2.1)
A 		6.2
(-3)
A 		13.5
(1.1)
A 		11
C 16
(3)
A 		0.7
(-3)
A 		5.8
(-1)
A 		7.8
(-0.2)
A 		15
avr 13.6
(3) 		4.3
(-3) 		6.3
(-1.7) 		9.2
(0.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.6
(2.1)
A 		6.8
(-0.6)
A 		3.4
(-3)
A 		11.8
(3)
A 		4.9
(-1.9)
A 		11.1
(2.5)
A 		8
B 14.8
(2.1)
A 		8.1
(-0.5)
A 		1.6
(-3)
A 		5.7
(-1.4)
A 		17.1
(3)
A 		6.2
(-1.2)
A 		16
C 10
(0.5)
A 		9.3
(0.2)
A 		2.1
(-2.6)
A 		4.4
(-1.7)
A 		1
(-3)
A 		16.6
(3)
A 		16
avr 11.8
(3) 		8.1
(0.6) 		2.4
(-3) 		7.3
(0.1) 		7.7
(0.4) 		11.3
(2.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14377
Sequence Type Exemplar sequence
Representative Public ID T10C6.3 NCBI
Target Description T10C6.3 /REP_DB=WormBase Gene ID /WP=CE16378 /TR=O45767 /GB=CAB07660.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074621 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-43) (srx-43) mRNA, complete cds. 11/11 None
SNAP00000027903 ENSEMBL cdna:SNAP chromosome:CEL140:V:16020554:16021878:1 10/11 None
GENEFINDER00000027929 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16020554:16025268:1 11/11 None
T10C6.3 ENSEMBL cdna:known chromosome:CEL140:V:16020554:16022445:1 gene:T10C6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16020553-16021878(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-43
Ensembl T10C6.3
Entrez Gene 188374 Entrez gene
SwissProt O45767 EMBL-EBI
WormBase CE36322 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07660 Hypothetical protein T10C6.3 [Caenorhabditis elegans] ref|NP_507022.2| Serpentine Receptor, class X family member (srx-43) [Caenorhabditis elegans] 1.0E-175
blast CAB07660 Hypothetical protein T10C6.3 [Caenorhabditis elegans] ref|NP_507022.2| Serpentine Receptor, class X family member (srx-43) [Caenorhabditis elegans] 1.0E-153
blast CAB07660 Hypothetical protein T10C6.3 [Caenorhabditis elegans] ref|NP_507022.2| Serpentine Receptor, class X family member (srx-43) [Caenorhabditis elegans] 1.0E-135
blast CAB07661 Hypothetical protein T10C6.4 [Caenorhabditis elegans] ref|NP_507023.2| Serpentine Receptor, class X family member (srx-44) [Caenorhabditis elegans] 1.0E-120
blast CAE74812 Hypothetical protein CBG22647 [Caenorhabditis briggsae] 2.0E-87
blast CAE74813 Hypothetical protein CBG22648 [Caenorhabditis briggsae] 5.0E-78
blast CAE74813 Hypothetical protein CBG22648 [Caenorhabditis briggsae] 4.0E-71
blast CAB01120 Hypothetical protein C06B3.11 [Caenorhabditis elegans] ref|NP_506455.2| Serpentine Receptor, class X family member (srx-42) [Caenorhabditis elegans] 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.2E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507022.2 7 23-45,95-117,137-159,164-186,190-212,233-252,267-289
T10C6.3 7 23-45,95-117,137-159,164-186,190-212,233-252,267-289
SNAP00000027903 5 34-53,96-118,131-153,168-190,210-229
GENEFINDER00000027929 13 23-45,95-117,137-159,164-186,190-212,232-251,311-333,340-362,372-394,414-436,468-490,511-530,545-567
Sequence
Target Sequence 
>C. ELEGANS:179097_AT
ggaagcttctcgacattaggcgtgctcctgaacatcaagcccgtgctatctatcagttac
ctcttcggaaatttcagcatcttcctgctccctgtgattttgattagcttcttgctaatg
tcgtttaatagattctgcgcctgctttttcccattgagatatcagaatttgttctcaagc
tccatgatcagaacttttatcgttttcaactggcttctatcgctcgtagcaggcagctat
ttagttgtagtacgagaatgcaacttcgtattctaccatttcggatggttgtttgctggc
tccgtttcagtaaagtgtgggactctgctgagcctctattcgatctcgattcagacggtt
ctaagcatcacaattgtcggcctggatgtagtcactttggttgctttgatggcttttaga
agcaaggtataccagagccatagtgtcgaggtgcgaagacgtgagctgagcttttctgga
caggtcataattcaaggtgcagtatttctgtgtcatggtgcatggtatgatatgggtcac
gcgatcctcccgggaaacgacgaccgctggaagttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGCTTCTCGACATTAGGCGTGC 358 529 238 Antisense
GAACATCAAGCCCGTGCTATCTATC 115 351 267 Antisense
CTATCTATCAGTTACCTCTTCGGAA 709 223 283 Antisense
TAATAGATTCTGCGCCTGCTTTTTC 288 635 363 Antisense
TCGTTTTCAACTGGCTTCTATCGCT 618 603 437 Antisense
GCAACTTCGTATTCTACCATTTCGG 680 317 497 Antisense
TGTTTGCTGGCTCCGTTTCAGTAAA 462 561 527 Antisense
TAAGCATCACAATTGTCGGCCTGGA 699 635 599 Antisense
TCGGCCTGGATGTAGTCACTTTGGT 296 607 614 Antisense
GAGCTGAGCTTTTCTGGACAGGTCA 221 387 700 Antisense
GAAACGACGACCGCTGGAAGTTCTT 326 357 791 Antisense
Sequence Source Affymetrix Proprietary Database