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[179096_at]

Description F40D4.3 /REP_DB=WormBase Gene ID /WP=CE19837 /TR=Q9U3G2 /GB=CAB63200.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 18      6grp_cgc > 82      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 18.7
(-3)
A 		26.5
(-1.3)
A 		28.7
(-0.8)
P 		46.3
(3)
M 		28
B 23.3
(-1.7)
A 		42
(3)
P 		18.1
(-3)
A 		24.1
(-1.5)
A 		24
C 15.5
(-3)
M 		30.4
(-1.5)
A 		23.1
(-2.2)
A 		75.4
(3)
P 		60
avr 19.2
(-3) 		33
(-0.2) 		23.3
(-2.2) 		48.6
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 36.8
(3)
A 		34.3
(2.3)
P 		32.7
(1.9)
P 		25.1
(-0.2)
P 		14.8
(-3)
A 		23.4
(-0.7)
A 		22
B 2.7
(-3)
A 		24.3
(0)
A 		45.4
(3)
P 		15.4
(-1.2)
A 		19.1
(-0.7)
A 		32.6
(1.2)
P 		43
C 10.7
(-1.5)
A 		29.8
(3)
P 		28.9
(2.8)
A 		18.4
(0.3)
A 		4.1
(-3)
A 		5.8
(-2.6)
A 		26
avr 16.7
(-2) 		29.5
(1.4) 		35.7
(3) 		19.6
(-1.2) 		12.7
(-3) 		20.6
(-0.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.8
(0.7)
A 		5.7
(-3)
A 		7.5
(3)
P 		6.8
(0.7)
M 		2
B 7.4
(0.1)
A 		10.4
(3)
P 		4.2
(-3)
A 		5.1
(-2.1)
A 		6
C 5.1
(-3)
M 		8.7
(-0.2)
A 		8.1
(-0.6)
A 		12.7
(3)
P 		8
avr 6.4
(-3) 		8.3
(3) 		6.6
(-2.4) 		8.2
(2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.8
(-1.2)
A 		12.2
(3)
P 		7.1
(-1)
P 		6.4
(-1.5)
P 		4.5
(-3)
A 		5.7
(-2.1)
A 		8
B 0.9
(-3)
A 		8.1
(0.8)
A 		11
(2.4)
P 		4.1
(-1.3)
A 		7.7
(0.6)
A 		12.2
(3)
P 		11
C 4
(-0.9)
A 		9.1
(3)
P 		7.4
(1.7)
A 		3.7
(-1.2)
A 		1.3
(-3)
A 		2
(-2.5)
A 		8
avr 3.9
(-3) 		9.8
(3) 		8.5
(1.7) 		4.7
(-2.2) 		4.5
(-2.4) 		6.6
(-0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13833
Sequence Type Exemplar sequence
Representative Public ID F40D4.3 NCBI
Target Description F40D4.3 /REP_DB=WormBase Gene ID /WP=CE19837 /TR=Q9U3G2 /GB=CAB63200.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074949 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-159) (srh-159) mRNA, complete cds. 11/11 None
SNAP00000026449 ENSEMBL cdna:SNAP chromosome:CEL140:V:17184585:17186202:1 11/11 None
F40D4.3 ENSEMBL cdna:known chromosome:CEL140:V:17184923:17186202:1 gene:F40D4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026458 8/11 Cross Hyb Matching Probes None
F40D4.4 2/11 Cross Hyb Matching Probes A 
F20E11.13 1/11 Cross Hyb Matching Probes A 
F20E11.14 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17184922-17186202(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-159
Ensembl F40D4.3
Entrez Gene 185521 Entrez gene
SwissProt Q9U3G2 EMBL-EBI
WormBase CE19837 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63200 Hypothetical protein F40D4.3 [Caenorhabditis elegans] ref|NP_507350.1| Serpentine Receptor, class H family member (srh-159) [Caenorhabditis elegans] 1.0E-177
blast T21155 hypothetical protein F20E11.3 - Caenorhabditis elegans 1.0E-137
blast T21160 hypothetical protein F20E11.9 - Caenorhabditis elegans 1.0E-128
blast CAB63200 Hypothetical protein F40D4.3 [Caenorhabditis elegans] ref|NP_507350.1| Serpentine Receptor, class H family member (srh-159) [Caenorhabditis elegans] 1.0E-115
blast T21155 hypothetical protein F20E11.3 - Caenorhabditis elegans 8.0E-87
blast T21160 hypothetical protein F20E11.9 - Caenorhabditis elegans 3.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.6E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507350.1 7 20-39,52-74,94-116,137-159,196-218,239-261,276-298
F40D4.3 7 20-39,52-74,94-116,137-159,196-218,239-261,276-298
SNAP00000026449 5 39-58,79-101,138-160,181-203,218-240
Sequence
Target Sequence 
>C. ELEGANS:179096_AT
ttttctttttgctccctgatcaagaatctggaagacttgtattgaaaagtaaaagccagt
gtattccaaccgatgttttcgatcatccaaacttctttttactcgatctcaatggtaaca
atattgcgatttgcatgttattattgatgattattcttatatctcaactgttgatgcaat
tcgggctgattttccgtcatttgctcaaaagtacacccatttctagaagcacaattcgat
tacaacaacaattttttatcgctatgagcatgcaagttatccttccaattgtcataattg
cttttccagctttctatattcttttttcaattatatctggttatcataatcaaggtgcaa
ccaacatagcgttcatggtaatgtccatacatggagtgttatccactttaacaatgctca
tggcatacagacattatagagaatcaattttggaaatgttgaatctgaatttatatcggt
caggtggtagtgctcaacgtatttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTTTTTGCTCCCTGATCAAGA 74 677 476 Antisense
TTTGCTCCCTGATCAAGAATCTGGA 174 669 483 Antisense
TTGCGATTTGCATGTTATTATTGAT 425 703 599 Antisense
TGATGATTATTCTTATATCTCAACT 112 567 620 Antisense
ACTGTTGATGCAATTCGGGCTGATT 398 97 642 Antisense
AGCACAATTCGATTACAACAACAAT 305 77 703 Antisense
GCTTTTCCAGCTTTCTATATTCTTT 404 305 775 Antisense
AGGTGCAACCAACATAGCGTTCATG 518 57 828 Antisense
AGCGTTCATGGTAATGTCCATACAT 537 81 843 Antisense
ATATCGGTCAGGTGGTAGTGCTCAA 342 19 948 Antisense
AGGTGGTAGTGCTCAACGTATTTGG 159 57 957 Antisense
Sequence Source Affymetrix Proprietary Database