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[179095_at]

Description F32D8.2 /REP_DB=WormBase Gene ID /WP=CE05781 /TR=Q19963 /GB=CAA98454.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 9.6
(-3)
A 		44.4
(-1.2)
A 		24.3
(-2.2)
A 		123.1
(3)
A 		114
B 39.6
(1.8)
A 		40.2
(3)
A 		37.1
(-3)
A 		40.1
(2.8)
A 		3
C 22.4
(-2)
A 		9.7
(-3)
A 		15
(-2.6)
A 		83.2
(3)
P 		74
avr 23.9
(-3) 		31.4
(-2.2) 		25.5
(-2.8) 		82.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 48.5
(-2.4)
A 		38.5
(-2.8)
A 		53.2
(-2.2)
P 		175.7
(3)
P 		146
(1.7)
P 		33.4
(-3)
A 		142
B 32.3
(-2.5)
A 		23.4
(-3)
P 		31.2
(-2.6)
A 		141.8
(3)
P 		122.8
(2)
P 		27.8
(-2.8)
A 		118
C 2.8
(-3)
A 		51.6
(-1.6)
P 		24.8
(-2.4)
A 		212.7
(3)
P 		107.9
(0)
P 		23.8
(-2.4)
A 		210
avr 27.9
(-3) 		37.8
(-2.6) 		36.4
(-2.7) 		176.7
(3) 		125.6
(0.9) 		28.3
(-3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.5
(-3)
A 		9.6
(-0.5)
A 		6.3
(-1.8)
A 		18
(3)
A 		15
B 12.6
(3)
A 		9.9
(-1)
A 		8.6
(-2.9)
A 		8.5
(-3)
A 		4
C 7.4
(-0.5)
A 		2.8
(-3)
A 		5.2
(-1.7)
A 		14
(3)
P 		11
avr 7.8
(-2) 		7.4
(-2.4) 		6.7
(-3) 		13.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 8.9
(-2.9)
A 		13.7
(-2.1)
A 		11.6
(-2.4)
P 		44.6
(3)
P 		44.1
(2.9)
P 		8.1
(-3)
A 		37
B 11.3
(-2.5)
A 		7.8
(-3)
P 		7.6
(-3)
A 		37.6
(1.3)
P 		49.9
(3)
P 		10.4
(-2.6)
A 		42
C 1
(-3)
A 		15.7
(-0.9)
P 		6.3
(-2.2)
A 		42.8
(3)
P 		34.9
(1.9)
P 		8
(-2)
A 		42
avr 7.1
(-3) 		12.4
(-2.1) 		8.5
(-2.8) 		41.7
(2.8) 		43
(3) 		8.8
(-2.7) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14323
Sequence Type Exemplar sequence
Representative Public ID F32D8.2 NCBI
Target Description F32D8.2 /REP_DB=WormBase Gene ID /WP=CE05781 /TR=Q19963 /GB=CAA98454.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073370(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073370 NCBI Caenorhabditis elegans F32D8.2 (F32D8.2) mRNA, complete cds. 10/11 None
GENEFINDER00000041045 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10886365:10888953:1 9/11 None
F32D8.2 ENSEMBL cdna:known chromosome:CEL140:V:10886365:10888689:1 gene:F32D8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10886364-10888689(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32D8.2
Entrez Gene 185204 Entrez gene
SwissProt Q19963 EMBL-EBI
WormBase CE38338 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98454 Hypothetical protein F32D8.2 [Caenorhabditis elegans] ref|NP_505771.2| F32D8.2 [Caenorhabditis elegans] 0.0
blast CAE64907 Hypothetical protein CBG09726 [Caenorhabditis briggsae] 1.0E-174
blast CAE64907 Hypothetical protein CBG09726 [Caenorhabditis briggsae] 1.0E-173
blast CAE64907 Hypothetical protein CBG09726 [Caenorhabditis briggsae] 1.0E-168
blast CAE64841 Hypothetical protein CBG09637 [Caenorhabditis briggsae] 1.0E-112
blast CAE64841 Hypothetical protein CBG09637 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505771.2 1 12-34
F32D8.2 1 12-34
GENEFINDER00000041045 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:179095_AT
atccaatgtttgcttttcgtccatccaaccaattcatagaaaataataatcagaaactat
atttcatgaatatgaatttcaacaggttattgtcttctactaatttcaatcaaatgcttg
ttgaattaatcaatccgaaagaaaaatcttcaaaatctgtcttcatagctcaaccaacat
caaggaactgtacgtctgaaggaatatcagaaaatatatgtttatgcatgaatatggtaa
tttctttgaaaagtacatcctctgggtatcctgaaaaaggcgaaaaaaacttccttcaaa
cattgcgaacaagatttacacaagaagtgaaaacacacaaatgtgttcgttcgtttgaac
ttgaagattataaaattttttatgaatactcaattggaacaagtaaggaagtacgtggcg
tagaattgaccggatttgtgaatattatcagttcaaggggtaagaaaacccttttgctga
aaaagatgttcaccttcaaaccggagtttgcttcatttaatagtttcgatacagcaaggg
ttgttgtcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCAATGTTTGCTTTTCGTCCATC 11 39 1154 Antisense
TTCGTCCATCCAACCAATTCATAGA 206 695 1169 Antisense
AACAGGTTATTGTCTTCTACTAATT 227 137 1234 Antisense
AATCTGTCTTCATAGCTCAACCAAC 265 169 1307 Antisense
GGAACTGTACGTCTGAAGGAATATC 94 529 1337 Antisense
AAAGTACATCCTCTGGGTATCCTGA 2 121 1403 Antisense
AAACTTCCTTCAAACATTGCGAACA 538 127 1440 Antisense
GTACGTGGCGTAGAATTGACCGGAT 245 457 1564 Antisense
AGATGTTCACCTTCAAACCGGAGTT 26 69 1637 Antisense
AACCGGAGTTTGCTTCATTTAATAG 441 147 1652 Antisense
CGATACAGCAAGGGTTGTTGTCGGT 558 245 1680 Antisense
Sequence Source Affymetrix Proprietary Database