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[179094_s_at]

Description T16G1.4 /REP_DB=WormBase Gene ID /WP=CE20074 /TR=Q9XUP7 /GB=CAB04728.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 04      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 15      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 404
(3)
P 		256.7
(-0.9)
P 		174.8
(-3)
P 		257.7
(-0.8)
P 		229
B 468.6
(3)
P 		209.3
(-2)
P 		154.9
(-3)
P 		282.7
(-0.6)
P 		314
C 435.1
(3)
P 		201.4
(-2.6)
P 		185.8
(-3)
P 		255.1
(-1.3)
P 		249
avr 435.9
(3) 		222.5
(-1.8) 		171.8
(-3) 		265.2
(-0.9) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 289.1
(3)
P 		275.9
(2.3)
P 		228.7
(0)
P 		168
(-3)
P 		179.4
(-2.4)
P 		167.5
(-3)
P 		122
B 254.6
(2.9)
P 		256.1
(3)
P 		209
(0.8)
P 		168.8
(-1)
P 		207.1
(0.8)
P 		125.4
(-3)
P 		131
C 344.3
(3)
P 		289.7
(1.4)
P 		198
(-1.4)
P 		221.3
(-0.7)
P 		144.5
(-3)
P 		153.2
(-2.7)
P 		200
avr 296
(3) 		273.9
(2.1) 		211.9
(-0.4) 		186
(-1.5) 		177
(-1.8) 		148.7
(-3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 147.1
(3)
P 		55.7
(-2)
P 		45.7
(-2.6)
P 		37.7
(-3)
P 		109
B 149.4
(3)
P 		51.7
(-2.2)
P 		35.9
(-3)
P 		60.2
(-1.7)
P 		114
C 144
(3)
P 		57.9
(-2.1)
P 		64.8
(-1.7)
P 		43
(-3)
P 		101
avr 146.8
(3) 		55.1
(-2.5) 		48.8
(-2.9) 		47
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 53.3
(-1.7)
P 		98.1
(3)
P 		49.8
(-2.1)
P 		42.6
(-2.8)
P 		54.1
(-1.6)
P 		40.8
(-3)
P 		57
B 88.6
(3)
P 		85.3
(2.5)
P 		50.8
(-2.2)
P 		44.7
(-3)
P 		84.2
(2.4)
P 		46.7
(-2.7)
P 		44
C 127.6
(3)
P 		88.4
(0.2)
P 		50.4
(-2.6)
P 		44.5
(-3)
P 		46.8
(-2.8)
P 		51.3
(-2.5)
P 		83
avr 89.8
(2.9) 		90.6
(3) 		50.3
(-2.2) 		43.9
(-3) 		61.7
(-0.7) 		46.3
(-2.7) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179094_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12654
Sequence Type Exemplar sequence
Representative Public ID T16G1.4 NCBI
Target Description T16G1.4 /REP_DB=WormBase Gene ID /WP=CE20074 /TR=Q9XUP7 /GB=CAB04728.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073835 NCBI Caenorhabditis elegans T16G1.4 (T16G1.4) mRNA, complete cds. 11/11 A 
SNAP00000020369 ENSEMBL cdna:SNAP chromosome:CEL140:V:12942802:12944374:-1 11/11 None
GENEFINDER00000020376 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12942628:12944374:-1 11/11 None
T16G1.4 ENSEMBL cdna:known chromosome:CEL140:V:12942628:12944437:-1 gene:T16G1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12942627-12944374(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16G1.4
Entrez Gene 179776 Entrez gene
SwissProt Q9XUP7 EMBL-EBI
WormBase CE20074 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04728 Hypothetical protein T16G1.4 [Caenorhabditis elegans] ref|NP_506236.1| T16G1.4 [Caenorhabditis elegans] 0.0
blast CAB63314 Hypothetical protein T16G1.7 [Caenorhabditis elegans] ref|NP_506233.1| T16G1.7 [Caenorhabditis elegans] 1.0E-179
blast CAB63314 Hypothetical protein T16G1.7 [Caenorhabditis elegans] ref|NP_506233.1| T16G1.7 [Caenorhabditis elegans] 1.0E-178
blast CAE64714 Hypothetical protein CBG09500 [Caenorhabditis briggsae] 1.0E-177
Sequence
Target Sequence 
>C. ELEGANS:179094_S_AT
aagctcttcaggacaacgagacgccatattcactggagcaattaaaagaatcctaccgtc
aatattttgttactgctggtctctttatgttgcccatgtttggaccgattgcacagatga
aactttcttattcatccgacaacgaacacgcagaagagtatcgtgaagttctcacagaaa
aagctgaacggctaatggaagatttggaacgttggcacttgcacagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTCTTCAGGACAACGAGACGCC 665 147 1040 Antisense
ACGAGACGCCATATTCACTGGAGCA 565 93 1055 Antisense
AGAATCCTACCGTCAATATTTTGTT 139 75 1086 Antisense
ATATTTTGTTACTGCTGGTCTCTTT 399 19 1101 Antisense
CTGGTCTCTTTATGTTGCCCATGTT 25 241 1115 Antisense
GTTGCCCATGTTTGGACCGATTGCA 149 439 1128 Antisense
TGTTTGGACCGATTGCACAGATGAA 227 561 1136 Antisense
GAAACTTTCTTATTCATCCGACAAC 174 357 1158 Antisense
TCATCCGACAACGAACACGCAGAAG 13 623 1171 Antisense
GAGTATCGTGAAGTTCTCACAGAAA 26 399 1195 Antisense
TTGGAACGTTGGCACTTGCACAGTA 192 703 1243 Antisense
Sequence Source Affymetrix Proprietary Database