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[179093_at]

Description T16G1.4 /REP_DB=WormBase Gene ID /WP=CE20074 /TR=Q9XUP7 /GB=CAB04728.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 03      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 34      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 371.8
(3)
P 		178
(-1.7)
P 		149.6
(-2.4)
P 		126.2
(-3)
P 		246
B 390.1
(3)
P 		199.2
(-1.4)
P 		132
(-3)
P 		167.2
(-2.2)
P 		258
C 352.7
(3)
P 		167.5
(-2.2)
P 		139.3
(-3)
P 		179.8
(-1.9)
P 		213
avr 371.5
(3) 		181.6
(-1.9) 		140.3
(-3) 		157.7
(-2.5) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 244.2
(3)
P 		221.6
(1.6)
P 		229.4
(2.1)
P 		197.3
(-0)
P 		150.6
(-3)
P 		177.8
(-1.3)
P 		94
B 262
(3)
P 		197.1
(0.4)
P 		251.9
(2.6)
P 		113
(-3)
P 		197.2
(0.4)
P 		157.3
(-1.2)
P 		149
C 237.4
(1.9)
P 		253.8
(3)
P 		197
(-0.8)
P 		189.3
(-1.3)
P 		176.6
(-2.2)
P 		164.3
(-3)
P 		90
avr 247.9
(3) 		224.2
(1.3) 		226.1
(1.4) 		166.5
(-3) 		174.8
(-2.4) 		166.5
(-3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 135.4
(3)
P 		38.6
(-2)
P 		39.1
(-1.9)
P 		18.5
(-3)
P 		117
B 124.4
(3)
P 		49.2
(-1.8)
P 		30.6
(-3)
P 		35.6
(-2.7)
P 		94
C 116.8
(3)
P 		48.1
(-1.8)
P 		48.5
(-1.7)
P 		30.3
(-3)
P 		87
avr 125.5
(3) 		45.3
(-1.9) 		39.4
(-2.3) 		28.1
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 45
(-2.7)
P 		78.8
(3)
P 		50
(-1.9)
P 		50
(-1.9)
P 		45.4
(-2.6)
P 		43.3
(-3)
P 		36
B 91.2
(3)
P 		65.6
(0.5)
P 		61.2
(0.1)
P 		29.9
(-3)
P 		80.1
(1.9)
P 		58.6
(-0.2)
P 		61
C 88
(3)
P 		77.4
(1.7)
P 		50.1
(-1.6)
P 		38.1
(-3)
P 		57.1
(-0.7)
P 		55
(-1)
P 		50
avr 74.7
(3) 		73.9
(2.9) 		53.8
(-0.5) 		39.3
(-3) 		60.9
(0.7) 		52.3
(-0.8) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12654
Sequence Type Exemplar sequence
Representative Public ID T16G1.4 NCBI
Target Description T16G1.4 /REP_DB=WormBase Gene ID /WP=CE20074 /TR=Q9XUP7 /GB=CAB04728.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073835 NCBI Caenorhabditis elegans T16G1.4 (T16G1.4) mRNA, complete cds. 11/11 A 
SNAP00000020369 ENSEMBL cdna:SNAP chromosome:CEL140:V:12942802:12944374:-1 11/11 None
GENEFINDER00000020376 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12942628:12944374:-1 11/11 None
T16G1.4 ENSEMBL cdna:known chromosome:CEL140:V:12942628:12944437:-1 gene:T16G1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12942627-12944374(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16G1.4
Entrez Gene 179776 Entrez gene
SwissProt Q9XUP7 EMBL-EBI
WormBase CE20074 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04728 Hypothetical protein T16G1.4 [Caenorhabditis elegans] ref|NP_506236.1| T16G1.4 [Caenorhabditis elegans] 0.0
blast CAB63314 Hypothetical protein T16G1.7 [Caenorhabditis elegans] ref|NP_506233.1| T16G1.7 [Caenorhabditis elegans] 1.0E-179
blast CAB63314 Hypothetical protein T16G1.7 [Caenorhabditis elegans] ref|NP_506233.1| T16G1.7 [Caenorhabditis elegans] 1.0E-178
blast CAE64714 Hypothetical protein CBG09500 [Caenorhabditis briggsae] 1.0E-177
Sequence
Target Sequence 
>C. ELEGANS:179093_AT
gcagactcgtgaaatcaatccggaacgattaaaagaaagcgtcgacaaagttgagattta
tggaactgagctcgtagatttggataaagctattaacctaaacagttacattggtatcga
acgtgatgtcttggtgcacggagatctgtggtcagcgaatattctatgggaagagaatga
gggaaaatttttagtaagcaaagttatagattaccagctcattcacatgggaaacccagc
tgaagatttggtaagacttcttctttgtacactttctggagcagatcgtcaagcacactg
ggaaaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGACTCGTGAAATCAATCCGGAA 635 311 702 Antisense
GAAAGCGTCGACAAAGTTGAGATTT 449 359 736 Antisense
GGAACTGAGCTCGTAGATTTGGATA 620 529 763 Antisense
GGTATCGAACGTGATGTCTTGGTGC 144 505 814 Antisense
GTGATGTCTTGGTGCACGGAGATCT 536 483 824 Antisense
GGTGCACGGAGATCTGTGGTCAGCG 94 501 834 Antisense
GTGGTCAGCGAATATTCTATGGGAA 257 489 849 Antisense
GTTATAGATTACCAGCTCATTCACA 657 445 904 Antisense
AGACTTCTTCTTTGTACACTTTCTG 20 73 955 Antisense
TTCTGGAGCAGATCGTCAAGCACAC 55 695 975 Antisense
GATCGTCAAGCACACTGGGAAAGGC 497 417 985 Antisense
Sequence Source Affymetrix Proprietary Database