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[179092_at]

Description M151.4 /REP_DB=WormBase Gene ID /WP=CE12440 /TR=O17117 /GB=AAB70375.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 34.9
(-1.7)
A 		35.8
(-1.5)
A 		69.8
(3)
A 		24.9
(-3)
A 		45
B 72.6
(-1)
A 		68.8
(-1.3)
A 		46.9
(-3)
A 		125.5
(3)
A 		79
C 89.9
(3)
A 		67.6
(0.6)
A 		33.8
(-3)
A 		70.6
(0.9)
A 		56
avr 65.8
(1) 		57.4
(-1.2) 		50.2
(-3) 		73.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 96.5
(3)
A 		12.3
(-3)
A 		53.5
(-0.1)
A 		16.3
(-2.7)
A 		41.8
(-0.9)
A 		66.9
(0.9)
A 		84
B 46.5
(-1.8)
A 		41.5
(-2.4)
A 		90
(3)
A 		36
(-3)
A 		61.1
(-0.2)
A 		39.2
(-2.6)
A 		54
C 77.5
(2.3)
A 		12.5
(-2.4)
A 		3.7
(-3)
A 		87.3
(3)
A 		49.8
(0.3)
A 		16.6
(-2.1)
A 		84
avr 73.5
(3) 		22.1
(-3) 		49.1
(0.2) 		46.5
(-0.2) 		50.9
(0.4) 		40.9
(-0.8) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 12.7
(0.7)
A 		7.8
(-1.3)
A 		18.2
(3)
A 		3.6
(-3)
A 		15
B 23.2
(1.7)
A 		17
(-0.7)
A 		10.9
(-3)
A 		26.7
(3)
A 		16
C 29.8
(3)
A 		19.4
(-0.5)
A 		11.8
(-3)
A 		11.9
(-3)
A 		18
avr 21.9
(3) 		14.7
(-2.2) 		13.6
(-3) 		14.1
(-2.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 17.8
(3)
A 		4.4
(-2.9)
A 		11.7
(0.3)
A 		4.1
(-3)
A 		12.6
(0.7)
A 		16.3
(2.3)
A 		14
B 16.2
(-0.4)
A 		13.8
(-1.3)
A 		21.9
(1.9)
A 		9.5
(-3)
A 		24.8
(3)
A 		14.6
(-1)
A 		15
C 28.7
(3)
A 		3.8
(-2.4)
A 		0.9
(-3)
A 		17.6
(0.6)
A 		16.1
(0.3)
A 		5.6
(-2)
A 		28
avr 20.9
(3) 		7.3
(-3) 		11.5
(-1.1) 		10.4
(-1.6) 		17.8
(1.6) 		12.2
(-0.8) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5898
Sequence Type Exemplar sequence
Representative Public ID M151.4 NCBI
Target Description M151.4 /REP_DB=WormBase Gene ID /WP=CE12440 /TR=O17117 /GB=AAB70375.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062197 NCBI Caenorhabditis elegans M151.4 (M151.4) mRNA, complete cds. 11/11 None
M151.4 ENSEMBL cdna:known chromosome:CEL140:II:3624192:3626876:1 gene:M151.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044216 4/11 Cross Hyb Matching Probes None
GENEFINDER00000044226 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3622329-3626875(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M151.4
Entrez Gene 187481 Entrez gene
SwissProt O17117 EMBL-EBI
WormBase CE28627 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494598 M151.4 [Caenorhabditis elegans] gb|AAK77623.1| Hypothetical protein M151.4 [Caenorhabditis elegans] 0.0
blast T32297 hypothetical protein M151.4 - Caenorhabditis elegans 0.0
blast NP_494600 M151.2 [Caenorhabditis elegans] gb|AAB70374.1| Hypothetical protein M151.2 [Caenorhabditis elegans] 8.0E-58
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 9.60000038146973
Sequence
Target Sequence 
>C. ELEGANS:179092_AT
cagggaaaagctcgatgcccaatttccgccgatctcccgatctccgagtactgaatgcgt
atggccagaaatgataattgatgatgtcttttggcaacagccaagcagctccacatccca
cgtctattcttcgtttgccttttctactccacgttccagctcccaaaatgctccagttca
agaagaagccacttcgcaccaatccacctcctccgagcctgcttcttctgctccgaactc
taattcttctccaaattcctcaggtatgtcacccgcagtcaccagctacttgtccaatat
ttctgagccgtttactttttcagctcgaattaccagacgtcatgcgccaccttccacctc
cagagcatccaaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGGAAAAGCTCGATGCCCAATTT 3 207 2694 Antisense
ATCTCCCGATCTCCGAGTACTGAAT 220 33 2725 Antisense
AGCTCCCAAAATGCTCCAGTTCAAG 354 81 2851 Antisense
AAGAAGAAGCCACTTCGCACCAATC 57 153 2873 Antisense
TCCGAACTCTAATTCTTCTCCAAAT 476 595 2925 Antisense
CAAATTCCTCAGGTATGTCACCCGC 467 193 2945 Antisense
GTCACCAGCTACTTGTCCAATATTT 69 467 2971 Antisense
GTCCAATATTTCTGAGCCGTTTACT 271 477 2985 Antisense
GCCGTTTACTTTTTCAGCTCGAATT 37 285 3000 Antisense
GCTCGAATTACCAGACGTCATGCGC 416 297 3016 Antisense
TTCCACCTCCAGAGCATCCAAAAGA 598 699 3045 Antisense
Sequence Source Affymetrix Proprietary Database