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[179091_at]

Description F15A2.7 /REP_DB=WormBase Gene ID /WP=CE05636 /TR=Q19471 /GB=CAA94129.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 16.4
(-2.4)
A 		10
(-3)
A 		58.2
(1.6)
A 		72.6
(3)
A 		63
B 16.5
(-2.2)
A 		12.6
(-3)
A 		24.8
(-0.4)
A 		40.6
(3)
A 		28
C 39.6
(2.4)
A 		11.5
(-3)
A 		31.5
(0.9)
A 		42.6
(3)
A 		31
avr 24.2
(-1.1) 		11.4
(-3) 		38.2
(1) 		51.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 13.3
(-0.6)
A 		17
(0.3)
A 		9
(-1.8)
A 		4.4
(-3)
A 		26.5
(2.8)
A 		27.1
(3)
A 		23
B 24.6
(3)
A 		11.3
(-0.6)
A 		15.3
(0.5)
A 		4.3
(-2.5)
A 		2.5
(-3)
A 		15.6
(0.6)
A 		22
C 5.7
(-3)
A 		31
(3)
A 		9.5
(-2.1)
A 		29.6
(2.7)
A 		13.9
(-1.1)
A 		21
(0.6)
A 		25
avr 14.5
(-1.1) 		19.8
(2.2) 		11.3
(-3) 		12.8
(-2.1) 		14.3
(-1.2) 		21.2
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6
(-1.2)
A 		2.2
(-3)
A 		15.2
(3)
A 		10.6
(0.9)
A 		13
B 5.3
(-0.6)
A 		3.1
(-3)
A 		5.7
(-0.2)
A 		8.6
(3)
A 		6
C 13.1
(3)
A 		3.3
(-3)
A 		11
(1.7)
A 		7.2
(-0.6)
A 		10
avr 8.1
(1.1) 		2.9
(-3) 		10.6
(3) 		8.8
(1.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.4
(-1.9)
A 		6
(1.3)
A 		2
(-2.2)
A 		1.1
(-3)
A 		8
(3)
A 		6.6
(1.8)
A 		7
B 8.6
(3)
A 		3.8
(-0.8)
A 		3.7
(-0.9)
A 		1.1
(-2.9)
A 		1
(-3)
A 		5.8
(0.8)
A 		8
C 2.1
(-3)
A 		9.4
(3)
A 		2.4
(-2.8)
A 		5.9
(0.1)
A 		4.5
(-1)
A 		7
(1)
A 		7
avr 4.4
(-0.3) 		6.4
(2.8) 		2.7
(-3) 		2.7
(-3) 		4.5
(-0.2) 		6.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17919
Sequence Type Exemplar sequence
Representative Public ID F15A2.7 NCBI
Target Description F15A2.7 /REP_DB=WormBase Gene ID /WP=CE05636 /TR=Q19471 /GB=CAA94129.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077853 NCBI Caenorhabditis elegans F15A2.7 (F15A2.7) mRNA, complete cds. 11/11 None
F15A2.7 ENSEMBL cdna:known chromosome:CEL140:X:13489744:13490052:1 gene:F15A2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13489743-13490052(+) 8.74 100.0
Public Domain and Genome References
Gene Title
Ensembl F15A2.7
Entrez Gene 184509 Entrez gene
SwissProt Q19471 EMBL-EBI
WormBase CE05636 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94129 Hypothetical protein F15A2.7 [Caenorhabditis elegans] ref|NP_510254.1| F15A2.7 [Caenorhabditis elegans] 1.0E-54
Sequence
Target Sequence 
>C. ELEGANS:179091_AT
tcacggcgtcacttaagcctgtacccaaatgtatagtgcggcgcggaaccccgaacgtgt
cggtccaaacaaccacctctttgcactacgttgcgcacacaccaagctactcatttcacg
ccaagccgaacgtgccggccgctccaaatgactacatttcgcacatcatttcaaacacac
acaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACGGCGTCACTTAAGCCTGTACC 376 625 47 Antisense
GTCACTTAAGCCTGTACCCAAATGT 558 413 54 Antisense
AAGCCTGTACCCAAATGTATAGTGC 36 149 61 Antisense
ACCCAAATGTATAGTGCGGCGCGGA 277 89 69 Antisense
CTCATTTCACGCCAAGCCGAACGTG 51 229 156 Antisense
CATTTCACGCCAAGCCGAACGTGCC 232 213 158 Antisense
GGCCGCTCCAAATGACTACATTTCG 218 539 183 Antisense
GACTACATTTCGCACATCATTTCAA 428 373 196 Antisense
ACATTTCGCACATCATTTCAAACAC 227 105 200 Antisense
TTCGCACATCATTTCAAACACACAC 488 697 204 Antisense
GCACATCATTTCAAACACACACACA 438 317 207 Antisense
Sequence Source Affymetrix Proprietary Database