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[179090_at]

Description F25B3.5 /REP_DB=WormBase Gene ID /WP=CE05715 /TR=Q19771 /GB=CAA94757.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 04      6grp_total > 12      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 79.8
(2.3)
P 		74.5
(0.7)
A 		63
(-3)
P 		81.9
(3)
P 		19
B 85.6
(0.5)
P 		52
(-1.6)
P 		30.7
(-3)
A 		123.5
(3)
P 		93
C 63.8
(-2.3)
P 		58.1
(-2.7)
A 		53.9
(-3)
P 		143.3
(3)
P 		89
avr 76.4
(-0.6) 		61.5
(-1.9) 		49.2
(-3) 		116.2
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 73.9
(1.3)
P 		63.3
(0.1)
P 		89.3
(3)
P 		72.9
(1.2)
A 		60.4
(-0.2)
P 		35.9
(-3)
A 		53
B 85.3
(1.2)
P 		100.1
(3)
P 		55.5
(-2.4)
A 		70.2
(-0.6)
A 		65.7
(-1.2)
P 		50.5
(-3)
P 		50
C 81.1
(1.1)
P 		112.2
(3)
P 		58.6
(-0.3)
A 		14.4
(-3)
A 		47
(-1)
A 		63.6
(0)
A 		98
avr 80.1
(1.3) 		91.9
(3) 		67.8
(-0.5) 		52.5
(-2.6) 		57.7
(-1.9) 		50
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 29.1
(3)
P 		16.2
(-1.5)
A 		16.5
(-1.4)
P 		12
(-3)
P 		17
B 27.3
(3)
P 		12.8
(-1.3)
P 		7.1
(-3)
A 		26.3
(2.7)
P 		20
C 21.1
(0.5)
P 		16.7
(-3)
A 		18.8
(-1.3)
P 		24.2
(3)
P 		8
avr 25.8
(3) 		15.2
(-2.4) 		14.1
(-3) 		20.8
(0.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 13.6
(-0.9)
P 		22.5
(3)
P 		19.5
(1.7)
P 		18.5
(1.3)
A 		18.2
(1.1)
P 		8.7
(-3)
A 		14
B 29.7
(1.9)
P 		33.3
(3)
P 		13.5
(-3)
A 		18.6
(-1.5)
A 		26.7
(1)
P 		18.8
(-1.4)
P 		20
C 30.1
(2.2)
P 		34.2
(3)
P 		14.9
(-0.7)
A 		2.9
(-3)
A 		15.2
(-0.6)
A 		21.3
(0.5)
A 		31
avr 24.5
(1) 		30
(3) 		16
(-2) 		13.3
(-3) 		20
(-0.6) 		16.3
(-1.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12336
Sequence Type Exemplar sequence
Representative Public ID F25B3.5 NCBI
Target Description F25B3.5 /REP_DB=WormBase Gene ID /WP=CE05715 /TR=Q19771 /GB=CAA94757.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073070 NCBI Caenorhabditis elegans F25B3.5 (F25B3.5) mRNA, complete cds. 11/11 None
SNAP00000011934 ENSEMBL cdna:SNAP chromosome:CEL140:V:9571645:9572875:-1 11/11 None
GENEFINDER00000011938 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9568212:9572875:-1 10/11 None
F25B3.5.1 ENSEMBL cdna:known chromosome:CEL140:V:9571333:9572877:-1 gene:F25B3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9571644-9572875(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F25B3.5
Entrez Gene 184916 Entrez gene
SwissProt Q19771 EMBL-EBI
WormBase CE31491 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94757 Hypothetical protein F25B3.5 [Caenorhabditis elegans] ref|NP_505471.2| F25B3.5 [Caenorhabditis elegans] 0.0
blast CAA94756 Hypothetical protein F25B3.4 [Caenorhabditis elegans] ref|NP_505470.1| F25B3.4 [Caenorhabditis elegans] 1.0E-170
blast CAA94757 Hypothetical protein F25B3.5 [Caenorhabditis elegans] ref|NP_505471.2| F25B3.5 [Caenorhabditis elegans] 1.0E-157
blast AAB42261 Hypothetical protein ZK354.9 [Caenorhabditis elegans] ref|NP_500776.1| ZK354.9 [Caenorhabditis elegans] 1.0E-140
blast CAE72202 Hypothetical protein CBG19311 [Caenorhabditis briggsae] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-39
Sequence
Target Sequence 
>C. ELEGANS:179090_AT
gagcgtggacaactgattcctccagtaatcaaaccccctgctgttccaattttggaattg
attttttcaaaggcagggattctcgaagcagtaacaagaacagttgctgcaatgttgtat
atgcaacttatagattctccgaacgaaaatttggaatcacgacgatctattctttatcgg
gaggaaggcagcaaatggattgaaatcttccttcctggagtagatgacaacaatccaaat
gtttcgccatttttcaaaatctttgacaacactgatgaaggaatccccgaagagcttttg
tgtgaaaaaaacaccgagtctgcacttagaatttatcaatctcgtgttcttattaaacga
tttttgatcagagaagatattgaaccggaggaaaaaagcctacttggacagattttggga
ataaacttcttctttctgaaacttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGTGGACAACTGATTCCTCCAG 417 387 481 Antisense
TGATTCCTCCAGTAATCAAACCCCC 617 563 494 Antisense
CCCCCTGCTGTTCCAATTTTGGAAT 345 261 514 Antisense
TGCAACTTATAGATTCTCCGAACGA 205 575 602 Antisense
GAATCACGACGATCTATTCTTTATC 456 327 634 Antisense
TGGATTGAAATCTTCCTTCCTGGAG 240 551 676 Antisense
GACAACAATCCAAATGTTTCGCCAT 25 367 706 Antisense
GGAATCCCCGAAGAGCTTTTGTGTG 370 529 760 Antisense
AAACACCGAGTCTGCACTTAGAATT 692 125 789 Antisense
AAAGCCTACTTGGACAGATTTTGGG 278 125 875 Antisense
TAAACTTCTTCTTTCTGAAACTTCA 65 641 902 Antisense
Sequence Source Affymetrix Proprietary Database