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[179089_at]

Description K08G2.8 /REP_DB=WormBase Gene ID /WP=CE16235 /TR=O18050 /GB=CAB03310.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 10      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 38.8
(-1.7)
A 		22.9
(-3)
A 		61.2
(0.2)
A 		94.1
(3)
P 		71
B 37.8
(-0.2)
A 		63.8
(3)
A 		14.5
(-3)
A 		30.4
(-1.1)
P 		49
C 41.6
(-2.4)
A 		57.3
(-1.6)
A 		31.4
(-3)
A 		141.6
(3)
P 		110
avr 39.4
(-2.6) 		48
(-1.6) 		35.7
(-3) 		88.7
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 65.6
(2.3)
A 		33.8
(-0.6)
A 		60.2
(1.8)
P 		7.8
(-3)
A 		72.7
(3)
P 		33.3
(-0.6)
A 		65
B 23
(-2.3)
A 		16.9
(-3)
A 		34.4
(-0.8)
A 		65.7
(3)
P 		65.2
(2.9)
P 		20.7
(-2.5)
P 		49
C 43.5
(-1.3)
A 		37.3
(-2.5)
P 		46.2
(-0.7)
A 		64.4
(3)
A 		35
(-3)
A 		41.1
(-1.8)
A 		29
avr 44
(0.1) 		29.3
(-3) 		46.9
(0.7) 		46
(0.5) 		57.6
(3) 		31.7
(-2.5) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.1
(2)
A 		5
(-3)
A 		16
(3)
A 		13.8
(1.8)
P 		11
B 12.1
(1.2)
A 		15.8
(3)
A 		3.4
(-3)
A 		6.5
(-1.5)
P 		12
C 13.8
(-1.7)
A 		16.5
(-0.4)
A 		10.9
(-3)
A 		23.9
(3)
P 		13
avr 13.3
(1.2) 		12.4
(0) 		10.1
(-3) 		14.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 12.1
(0)
A 		12
(0)
A 		13.1
(0.3)
P 		2
(-3)
A 		21.9
(3)
P 		8.1
(-1.2)
A 		20
B 8
(-2.3)
A 		5.6
(-3)
A 		8.4
(-2.2)
A 		17.4
(0.4)
P 		26.5
(3)
P 		7.7
(-2.4)
P 		21
C 16.1
(3)
A 		11.4
(-2.9)
P 		11.7
(-2.5)
A 		12.9
(-1)
A 		11.3
(-3)
A 		13.8
(0.1)
A 		5
avr 12.1
(-1.6) 		9.7
(-3) 		11.1
(-2.2) 		10.8
(-2.4) 		19.9
(3) 		9.9
(-2.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179089_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13306
Sequence Type Exemplar sequence
Representative Public ID K08G2.8 NCBI
Target Description K08G2.8 /REP_DB=WormBase Gene ID /WP=CE16235 /TR=O18050 /GB=CAB03310.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074561 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-293) (srh-293) mRNA, complete cds. 11/11 None
K08G2.8 ENSEMBL cdna:known chromosome:CEL140:V:15868723:15869917:1 gene:K08G2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15865925-15869917(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-293
Ensembl K08G2.8
Entrez Gene 187174 Entrez gene
SwissProt O18050 EMBL-EBI
WormBase CE34203 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03310 Hypothetical protein K08G2.8 [Caenorhabditis elegans] emb|CAB03195.2| Hypothetical protein K08G2.8 [Caenorhabditis elegans] ref|NP_506962.2| Serpentine Receptor, class H family member (srh-293) [Caenorhabditis elegans] 1.0E-178
blast AAK72055 Serpentine receptor, class h protein 297 [Caenorhabditis elegans] ref|NP_494484.3| Serpentine Receptor, class H family member (srh-297) [Caenorhabditis elegans] 5.0E-84
blast CAC15864 Hypothetical protein Y94A7B.9 [Caenorhabditis elegans] ref|NP_507501.1| Serpentine Receptor, class H family member (srh-304) [Caenorhabditis elegans] 9.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506962.2 7 17-39,52-74,89-111,132-154,199-216,245-267,277-299
K08G2.8 7 17-39,52-74,89-111,132-154,199-216,245-267,277-299
Sequence
Target Sequence 
>C. ELEGANS:179089_AT
ataccccttccttgttgcaaattatataattgtcatcacttactgcttcatcatatactt
agaaattcctgatcaagagattgcaattaaaaaactattcaaaaagtatcctcgatttta
taactttgaaattcctgtgtcatcatttatcgttattagtgatgaggacagatcctggca
aaagttacgacgaatatcagttataagctttattctgttggagataatagtttttggaat
attgttacgagtaaaattgaagctatcaatgaagaaaattgcatcttctatatccagcaa
gacacttcaaatgcaaaaaagatttatcaaagcattgaatctccagattgctattccact
gattgttatattcgttcccataatagctggtatgatatttaaagcattgtcaattgtgaa
ccctcaagccttcagtaacttactcaatttttacttttctcttcatggagtattatcgac
aattctcatgctctatctacagaacccctatcgtgaagcggttttgtccattttttgctg
ccgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACCCCTTCCTTGTTGCAAATTAT 636 21 1605 Antisense
TTGTCATCACTTACTGCTTCATCAT 381 707 1634 Antisense
AATTCCTGTGTCATCATTTATCGTT 639 177 1734 Antisense
GAATCTCCAGATTGCTATTCCACTG 337 329 1941 Antisense
CACTGATTGTTATATTCGTTCCCAT 677 195 1961 Antisense
GCATTGTCAATTGTGAACCCTCAAG 332 307 2008 Antisense
ACCCTCAAGCCTTCAGTAACTTACT 139 91 2024 Antisense
AATTTTTACTTTTCTCTTCATGGAG 372 173 2050 Antisense
TATCGACAATTCTCATGCTCTATCT 149 659 2078 Antisense
CTATCTACAGAACCCCTATCGTGAA 323 225 2097 Antisense
TTTTGTCCATTTTTTGCTGCCGAAA 90 677 2126 Antisense
Sequence Source Affymetrix Proprietary Database