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[179088_at]

Description T08G3.1 /REP_DB=WormBase Gene ID /WP=CE16371 /TR=O18069 /GB=CAB05792.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 35      6grp_cgc > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 4.7
(-3)
A 		62.2
(3)
A 		6.3
(-2.8)
A 		38.4
(0.5)
A 		58
B 6.7
(-3)
A 		46.6
(3)
A 		6.6
(-3)
A 		27.9
(0.2)
A 		40
C 48
(3)
A 		5.7
(-2.8)
A 		4.3
(-3)
A 		37.2
(1.5)
A 		44
avr 19.8
(-0.4) 		38.2
(3) 		5.7
(-3) 		34.5
(2.3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 4.8
(-2.8)
A 		4
(-3)
A 		25.7
(1.1)
A 		8.9
(-2.1)
A 		35.5
(3)
A 		30.4
(2)
A 		32
B 3
(-1.4)
A 		3
(-1.4)
A 		4.3
(0.9)
A 		5.5
(3)
A 		2.5
(-2.3)
A 		2.1
(-3)
A 		3
C 5.4
(-2.6)
A 		12.1
(2)
A 		13.5
(3)
A 		6.9
(-1.6)
A 		4.8
(-3)
A 		5.1
(-2.8)
A 		9
avr 4.4
(-3) 		6.4
(-1.8) 		14.5
(3) 		7.1
(-1.4) 		14.3
(2.9) 		12.5
(1.8) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.7
(-3)
A 		13.5
(3)
A 		1.7
(-3)
A 		5.6
(-1)
A 		12
B 2.1
(-2.6)
A 		11.5
(3)
A 		1.5
(-3)
A 		5.9
(-0.4)
A 		10
C 15.9
(3)
A 		1.6
(-3)
A 		1.5
(-3)
A 		6.3
(-1)
A 		14
avr 6.6
(1.1) 		8.9
(3) 		1.6
(-3) 		5.9
(0.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.4
(-2.7)
A 		5.6
(-0.1)
A 		2.3
(-2.1)
A 		10.7
(3)
A 		7.4
(1)
A 		10
B 1
(-1.3)
A 		1
(-1.3)
A 		1
(-1.3)
A 		1.5
(3)
A 		1
(-1.3)
A 		0.8
(-3)
A 		1
C 2
(-1.4)
A 		3.7
(3)
A 		3.4
(2.2)
A 		1.4
(-3)
A 		1.6
(-2.5)
A 		1.7
(-2.2)
A 		2
avr 1.3
(-3) 		2
(-1.6) 		3.3
(0.9) 		1.7
(-2.2) 		4.4
(3) 		3.3
(0.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13289
Sequence Type Exemplar sequence
Representative Public ID T08G3.1 NCBI
Target Description T08G3.1 /REP_DB=WormBase Gene ID /WP=CE16371 /TR=O18069 /GB=CAB05792.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074761(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074761 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-15) (str-15) mRNA, complete cds. 11/11 None
SNAP00000031133 ENSEMBL cdna:SNAP chromosome:CEL140:V:16459852:16461397:-1 11/11 None
GENEFINDER00000031145 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16454652:16463547:-1 10/11 None
T08G3.1 ENSEMBL cdna:known chromosome:CEL140:V:16459852:16461394:-1 gene:T08G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16459851-16461394(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-15
Ensembl T08G3.1
Entrez Gene 188292 Entrez gene
SwissProt O18069 EMBL-EBI
WormBase CE16371 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05792 Hypothetical protein T08G3.1 [Caenorhabditis elegans] ref|NP_507162.1| Seven TM Receptor family member (str-15) [Caenorhabditis elegans] 0.0
blast CAB05793 Hypothetical protein T08G3.2 [Caenorhabditis elegans] ref|NP_507161.1| Seven TM Receptor family member (str-14) [Caenorhabditis elegans] 1.0E-146
blast CAB05794 Hypothetical protein T08G3.3 [Caenorhabditis elegans] ref|NP_507163.1| Serpentine Receptor, class H family member (srh-142) [Caenorhabditis elegans] 1.0E-143
blast CAB05793 Hypothetical protein T08G3.2 [Caenorhabditis elegans] ref|NP_507161.1| Seven TM Receptor family member (str-14) [Caenorhabditis elegans] 1.0E-139
blast CAB05793 Hypothetical protein T08G3.2 [Caenorhabditis elegans] ref|NP_507161.1| Seven TM Receptor family member (str-14) [Caenorhabditis elegans] 1.0E-136
blast CAB05792 Hypothetical protein T08G3.1 [Caenorhabditis elegans] ref|NP_507162.1| Seven TM Receptor family member (str-15) [Caenorhabditis elegans] 1.0E-131
blast CAB04817 Hypothetical protein T23D5.6 [Caenorhabditis elegans] ref|NP_506919.1| Seven TM Receptor family member (str-18) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.9E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.0E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.8E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.0E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.0E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.6E-11
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.0E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507162.1 7 10-32,44-66,89-111,132-151,204-226,254-276,286-308
T08G3.1 7 10-32,44-66,89-111,132-151,204-226,254-276,286-308
SNAP00000031133 7 10-32,44-66,76-98,119-138,191-213,241-263,273-295
GENEFINDER00000031145 15 15-37,58-80,95-117,139-158,197-219,240-262,297-316,323-342,395-417,445-467,477-499,654-676,691-710,812-834,844-866
Sequence
Target Sequence 
>C. ELEGANS:179088_AT
ggactattaccaacttgatgtcacgaagatcccatgtttggtaactgttatttatcaaac
aattcccaactccaccgaaacattcatccgctggaaaaacgcattcgcaacaataaacat
gacaatattcgctacactacaatactctatcatgatttactgcagctacaaactgtataa
tgatatggaagaaaaactgagcctattgtcagaagatgctcggaagcttcatcgtcaaat
attcaaaactctcctgcttcagttaataacgccaaccattgctatgtacacgccagtttt
cacagtaatttacctaccgtttttgaatctggaatacacgttgccaactggaatatttat
gggcatttttgctctttatccggctctggatgcagttatattgatgtatgtcatcacaga
ctacaggagagctctcatagacgttctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTATTACCAACTTGATGTCACG 662 523 522 Antisense
GATGTCACGAAGATCCCATGTTTGG 378 409 538 Antisense
TTCGCTACACTACAATACTCTATCA 526 695 649 Antisense
CTCTATCATGATTTACTGCAGCTAC 471 229 666 Antisense
ATGCTCGGAAGCTTCATCGTCAAAT 214 43 737 Antisense
TCAAAACTCTCCTGCTTCAGTTAAT 6 629 764 Antisense
ACGCCAACCATTGCTATGTACACGC 508 91 790 Antisense
ATGTACACGCCAGTTTTCACAGTAA 631 45 805 Antisense
GAATCTGGAATACACGTTGCCAACT 227 329 846 Antisense
TATGGGCATTTTTGCTCTTTATCCG 666 655 879 Antisense
GGAGAGCTCTCATAGACGTTCTGAA 444 519 947 Antisense
Sequence Source Affymetrix Proprietary Database