[Home] | [Total List]

[179087_at]

Description T19C9.6 /REP_DB=WormBase Gene ID /WP=CE16423 /TR=O45791 /GB=CAB07485.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 1.7
(-3)
A 		13.7
(-0.7)
A 		2
(-2.9)
A 		32.7
(3)
A 		31
B 1.9
(-2.5)
A 		1.6
(-3)
A 		1.6
(-3)
A 		5.2
(3)
A 		4
C 11.8
(-1.3)
A 		1.7
(-3)
A 		4.7
(-2.5)
A 		37.3
(3)
A 		36
avr 5.1
(-2.4) 		5.7
(-2.2) 		2.8
(-3) 		25.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.9
(-1.1)
A 		6.1
(-1.9)
A 		23.6
(3)
A 		15.4
(0.7)
A 		2
(-3)
A 		6.9
(-1.6)
A 		22
B 2.6
(-2.5)
A 		3.4
(-1.9)
A 		1.8
(-3)
A 		9.4
(2)
A 		10.9
(3)
A 		3.7
(-1.7)
A 		9
C 15.6
(3)
A 		4.6
(-1.6)
A 		2.8
(-2.3)
A 		7.4
(-0.4)
A 		3
(-2.3)
A 		1.2
(-3)
A 		14
avr 9
(1.5) 		4.7
(-2.3) 		9.4
(1.9) 		10.7
(3) 		5.3
(-1.8) 		3.9
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.6
(-2.9)
A 		3
(0.5)
A 		0.5
(-3)
A 		4.8
(3)
A 		4
B 0.6
(-1.3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1.1
(3)
A 		1
C 3.9
(0.5)
A 		0.5
(-3)
A 		1.6
(-1.9)
A 		6.3
(3)
A 		6
avr 1.7
(-1.4) 		1.3
(-2.1) 		0.8
(-3) 		4.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.6
(-1.7)
A 		2.2
(-0.9)
A 		5.1
(3)
A 		3.9
(1.4)
A 		0.6
(-3)
A 		1.7
(-1.5)
A 		5
B 0.9
(-2.3)
A 		1.1
(-2)
A 		0.4
(-3)
A 		2.5
(0.2)
A 		4.4
(3)
A 		1.4
(-1.5)
A 		4
C 5.8
(3)
A 		1.4
(-1.9)
A 		0.7
(-2.7)
A 		1.5
(-1.8)
A 		1
(-2.3)
A 		0.4
(-3)
A 		5
avr 2.8
(3) 		1.6
(-1.5) 		2.1
(0.4) 		2.6
(2.3) 		2
(0) 		1.2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13426
Sequence Type Exemplar sequence
Representative Public ID T19C9.6 NCBI
Target Description T19C9.6 /REP_DB=WormBase Gene ID /WP=CE16423 /TR=O45791 /GB=CAB07485.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074964 NCBI Caenorhabditis elegans T19C9.6 (T19C9.6) mRNA, complete cds. 11/11 None
SNAP00000010314 ENSEMBL cdna:SNAP chromosome:CEL140:V:17232025:17232625:1 11/11 None
GENEFINDER00000010321 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17229756:17232625:1 11/11 None
T19C9.6 ENSEMBL cdna:known chromosome:CEL140:V:17232025:17232625:1 gene:T19C9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17232024-17232625(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19C9.6
Entrez Gene 188601 Entrez gene
SwissProt O45791 EMBL-EBI
WormBase CE16423 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07484 Hypothetical protein T19C9.5 [Caenorhabditis elegans] ref|NP_507364.1| T19C9.5 [Caenorhabditis elegans] 1.0E-103
blast CAA16500 Hypothetical protein F08E10.7 [Caenorhabditis elegans] ref|NP_507429.1| F08E10.7 [Caenorhabditis elegans] 4.0E-99
blast CAB07485 Hypothetical protein T19C9.6 [Caenorhabditis elegans] ref|NP_507365.1| T19C9.6 [Caenorhabditis elegans] 4.0E-77
blast CAB07485 Hypothetical protein T19C9.6 [Caenorhabditis elegans] ref|NP_507365.1| T19C9.6 [Caenorhabditis elegans] 3.0E-76
blast CAB03505 Hypothetical protein ZK1037.6 [Caenorhabditis elegans] ref|NP_506799.1| ZK1037.6 [Caenorhabditis elegans] 7.0E-15
blast CAB02803 Hypothetical protein C29F3.7 [Caenorhabditis elegans] ref|NP_741643.2| C29F3.7 [Caenorhabditis elegans] 3.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.6E-40
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.6E-40
Sequence
Target Sequence 
>C. ELEGANS:179087_AT
tactactgctggtttcgtttgcggagtcgcaatccgatttcaaatgcaacggacaatact
ctgttgacaaacccgacgatggaattcaactgtggtacccgtacatgtttacaagctact
cgttgccatattttccatccaattattcatgtgaatatgagatcaatgtgcctcaaaact
ggtacgctgtggttcatttatccgttcgatgcccgacttttgtaatgaacccgcttccag
ttcaggtaaccggggctctgctaggagttgtggaagttttttcgtcggatgatgaagttt
tcttttttgattccactggtggaaagatcaaccttgtcgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTACTGCTGGTTTCGTTTGCGGA 656 645 29 Antisense
AATACTCTGTTGACAAACCCGACGA 223 171 83 Antisense
TGGAATTCAACTGTGGTACCCGTAC 339 545 108 Antisense
GTACCCGTACATGTTTACAAGCTAC 417 457 123 Antisense
ATGTGCCTCAAAACTGGTACGCTGT 676 47 194 Antisense
CGCTGTGGTTCATTTATCCGTTCGA 362 255 213 Antisense
GCCCGACTTTTGTAATGAACCCGCT 137 285 239 Antisense
TGAACCCGCTTCCAGTTCAGGTAAC 595 573 254 Antisense
TAACCGGGGCTCTGCTAGGAGTTGT 362 627 275 Antisense
GTTTTCTTTTTTGATTCCACTGGTG 198 59 325 Antisense
GGTGGAAAGATCAACCTTGTCGCAG 146 499 346 Antisense
Sequence Source Affymetrix Proprietary Database