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[179086_s_at]

Description B0379.1 /REP_DB=WormBase Gene ID /WP=CE20452 /TR=Q9XU45 /GB=CAB05896.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 57      6grp_total > 51      4grp_total > 61      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1629
1 2 3 4 range
A 1320.1
(3)
P 		1155
(1.9)
P 		1060.4
(1.3)
P 		392.9
(-3)
P 		927
B 1858.3
(3)
P 		1128.7
(0.3)
P 		1215.3
(0.6)
P 		229.1
(-3)
P 		1629
C 1536.7
(3)
P 		1045.3
(0.5)
P 		1130.9
(0.9)
P 		352.9
(-3)
P 		1184
avr 1571.7
(3) 		1109.7
(0.8) 		1135.5
(0.9) 		325
(-3) 		1247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1320
1 2 3 4 5 6 range
A 3153.4
(3)
P 		2304.5
(-1.1)
P 		2895.6
(1.8)
P 		2586.1
(0.3)
P 		2686.7
(0.7)
P 		1909.9
(-3)
P 		1244
B 2524
(0.8)
P 		2395
(0.1)
P 		2915.2
(3)
P 		2853.6
(2.7)
P 		2375.5
(0)
P 		1833.5
(-3)
P 		1082
C 2248.7
(-1.6)
P 		2107.7
(-3)
P 		2333
(-0.7)
P 		2693.2
(3)
P 		2206.5
(-2)
P 		2382.6
(-0.2)
P 		586
avr 2642
(2.4) 		2269.1
(-1) 		2714.6
(3) 		2711
(3) 		2422.9
(0.4) 		2042
(-3) 		673
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 544
1 2 3 4 range
A 480.6
(3)
P 		250.7
(-0.3)
P 		277.2
(0.1)
P 		57.5
(-3)
P 		423
B 592.6
(3)
P 		278.8
(-0.5)
P 		281.6
(-0.4)
P 		48.8
(-3)
P 		544
C 508.7
(3)
P 		300.5
(0.2)
P 		394.2
(1.5)
P 		59.5
(-3)
P 		449
avr 527.3
(3) 		276.7
(-0.2) 		317.7
(0.3) 		55.3
(-3) 		472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 581.3
(-1)
P 		819.6
(3)
P 		630.6
(-0.2)
P 		655.9
(0.2)
P 		810.7
(2.8)
P 		465
(-3)
P 		355
B 878.2
(1.1)
P 		797.2
(-0.6)
P 		707.9
(-2.5)
P 		755.8
(-1.5)
P 		965.1
(3)
P 		683.7
(-3)
P 		281
C 833.5
(3)
P 		643.1
(-0.9)
P 		593.8
(-1.9)
P 		541.6
(-3)
P 		714
(0.5)
P 		797.6
(2.3)
P 		292
avr 764.3
(0.9) 		753.3
(0.5) 		644.1
(-3) 		651.1
(-2.8) 		829.9
(3) 		648.8
(-2.8) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179086_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1626
Sequence Type Exemplar sequence
Representative Public ID B0379.1 NCBI
Target Description B0379.1 /REP_DB=WormBase Gene ID /WP=CE20452 /TR=Q9XU45 /GB=CAB05896.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060258(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060258 NCBI Caenorhabditis elegans B0379.1 (B0379.1) mRNA, complete cds. 11/11 None
GENEFINDER00000021517 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10082480:10085745:1 11/11 None
B0379.1 ENSEMBL cdna:known chromosome:CEL140:I:10083103:10085838:1 gene:B0379.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021508 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10083059-10085676(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0379.1
Entrez Gene 172872 Entrez gene
SwissProt Q9XU45 EMBL-EBI
WormBase CE20452 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05896 Hypothetical protein B0379.1 [Caenorhabditis elegans] ref|NP_492659.1| B0379.1 [Caenorhabditis elegans] 1.0E-123
blast CAB05896 Hypothetical protein B0379.1 [Caenorhabditis elegans] ref|NP_492659.1| B0379.1 [Caenorhabditis elegans] 1.0E-120
blast CAE60222 Hypothetical protein CBG03793 [Caenorhabditis briggsae] 1.0E-117
blast CAE60222 Hypothetical protein CBG03793 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:179086_S_AT
gaaagctcaagttgcatccgactcaaaatggacatcagctccttacaagggatttgtggc
cggaagcccatcaaacacgtatattgatattgtttccactgcctttgaagacgccactaa
cacgatgaattttgctcgtcactcgaaatacgatgaaatgtattctccttatctcggatc
attccgcgaacgacacaattatacttcaattgctccaagcttgtgtattaacaaaacaaa
ccgtgccatcgagtatgacctggcaccacacaaggcttacaatccacgacaatccgaatg
gcttcttgaaaaagacaagaaatatagagttcgtggtgctcgtaatttaatttacacaaa
aagcgcatcggatatcagtttgcctccactgacacgtcgcacattcacagttccaacaga
tactcttcgtcatcagaatcaatttctctactggaatggtcgtgcacttggtcttgacta
tgttgctccattccttcgtcgtgaagattattctcgtcacgaggatcgccgttatcagag
aatttactggtctccacatttcattgatttgcttccatcttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCTCAAGTTGCATCCGACTCA 7 361 33 Antisense
ATTTGTGGCCGGAAGCCCATCAAAC 572 17 84 Antisense
ATGTATTCTCCTTATCTCGGATCAT 618 47 190 Antisense
AACCGTGCCATCGAGTATGACCTGG 478 145 271 Antisense
CAAGGCTTACAATCCACGACAATCC 180 183 303 Antisense
GCATCGGATATCAGTTTGCCTCCAC 361 309 397 Antisense
CACTGACACGTCGCACATTCACAGT 124 199 419 Antisense
GAATGGTCGTGCACTTGGTCTTGAC 307 333 486 Antisense
TCGTCACGAGGATCGCCGTTATCAG 18 605 546 Antisense
TACTGGTCTCCACATTTCATTGATT 672 647 577 Antisense
TTCATTGATTTGCTTCCATCTTGCC 555 689 592 Antisense
Sequence Source Affymetrix Proprietary Database