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[179085_at]

Description F55C9.1 /REP_DB=WormBase Gene ID /WP=CE18733 /TR=Q9XUZ6 /GB=CAB04466.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 1.9
(-3)
A 		3.2
(-2.8)
A 		4.4
(-2.6)
A 		41
(3)
A 		39
B 16.6
(-1.3)
A 		6.8
(-2.7)
A 		4.3
(-3)
A 		47.4
(3)
A 		43
C 22.7
(1.1)
A 		4.4
(-2.4)
A 		1.5
(-3)
A 		32.2
(3)
A 		31
avr 13.7
(-1.3) 		4.8
(-2.8) 		3.4
(-3) 		40.2
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 4.2
(-2.9)
A 		3.9
(-3)
A 		16.8
(0.3)
A 		4.9
(-2.7)
A 		7.2
(-2.2)
A 		27.3
(3)
A 		23
B 2.7
(-2.8)
A 		3.6
(-2.6)
A 		25.4
(1.3)
A 		1.3
(-3)
A 		21.4
(0.5)
A 		35.3
(3)
A 		34
C 3.7
(-2.5)
A 		15.4
(1)
A 		2.1
(-3)
A 		6.4
(-1.7)
A 		22.1
(3)
A 		21.2
(2.7)
A 		20
avr 3.5
(-3) 		7.6
(-2) 		14.8
(-0.2) 		4.2
(-2.8) 		16.9
(0.3) 		27.9
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.7
(-3)
A 		0.7
(-3)
A 		1.1
(-2.5)
A 		6
(3)
A 		5
B 5.3
(-0.2)
A 		1.7
(-2.5)
A 		1
(-3)
A 		10.1
(3)
A 		9
C 7.5
(3)
A 		1.3
(-2.3)
A 		0.5
(-3)
A 		5.4
(1.2)
A 		7
avr 4.5
(0.4) 		1.2
(-2.7) 		0.9
(-3) 		7.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.4
(-2.4)
A 		3.7
(-0.1)
A 		1.3
(-2.5)
A 		2.2
(-1.6)
A 		6.7
(3)
A 		6
B 0.9
(-2.8)
A 		1.2
(-2.6)
A 		6.2
(-0.3)
A 		0.4
(-3)
A 		8.7
(0.9)
A 		13.2
(3)
A 		13
C 1.4
(-2.2)
A 		4.7
(0.8)
A 		0.5
(-3)
A 		1.3
(-2.3)
A 		7.2
(3)
A 		7.1
(2.9)
A 		7
avr 1
(-3) 		2.4
(-2) 		3.5
(-1.1) 		1
(-3) 		6
(0.8) 		9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14627
Sequence Type Exemplar sequence
Representative Public ID F55C9.1 NCBI
Target Description F55C9.1 /REP_DB=WormBase Gene ID /WP=CE18733 /TR=Q9XUZ6 /GB=CAB04466.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075349(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075349 NCBI Caenorhabditis elegans F55C9.1 (F55C9.1) mRNA, complete cds. 11/11 None
SNAP00000026273 ENSEMBL cdna:SNAP chromosome:CEL140:V:19285187:19288402:1 11/11 None
GENEFINDER00000026287 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19285187:19287167:1 11/11 None
F55C9.1 ENSEMBL cdna:known chromosome:CEL140:V:19285187:19287167:1 gene:F55C9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19285186-19287167(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C9.1
Entrez Gene 186289 Entrez gene
SwissProt Q9XUZ6 EMBL-EBI
WormBase CE18733 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04466 Hypothetical protein F55C9.1 [Caenorhabditis elegans] ref|NP_507750.1| F55C9.1 [Caenorhabditis elegans] 0.0
blast CAB04844 Hypothetical protein T26H2.2 [Caenorhabditis elegans] ref|NP_507741.1| T26H2.2 [Caenorhabditis elegans] 9.0E-42
blast CAB04844 Hypothetical protein T26H2.2 [Caenorhabditis elegans] ref|NP_507741.1| T26H2.2 [Caenorhabditis elegans] 4.0E-40
blast CAB04846 Hypothetical protein T26H2.4 [Caenorhabditis elegans] ref|NP_507739.1| T26H2.4 [Caenorhabditis elegans] 2.0E-37
Sequence
Target Sequence 
>C. ELEGANS:179085_AT
ggatgtgacgagcggttcgacaatcaacataaagcactatgacaccagtgagctcttcca
gctggaagaagctcgaagatgcttcaagaatattctgattaatcgagtgtattgcttgtc
aaattctacgagcaatgtactacaatattgttctatttctacagaactacttacgataga
tacaaatcatactccagaacttgcgccagtgtttcatactattttatctggaaactttaa
aaaactgaaaatcaagtctccactacgtaatctcgatcacttgttgaacatggacagtag
cttagtgaatcttcaaaatcacaatttcaccgagaaagagctgaacttgttcctaaagca
ttggatactcggagttgctcatcgaaatctaaaaacgctgagcgcacacaatgagataaa
cgacgagacggctttatggaacggaattcgatatcaggttcaaccagagtcaaggataaa
aattactgaagatgactatttcatttggaagccatgtcgggaataccgtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTGACGAGCGGTTCGACAATC 375 515 423 Antisense
CTATGACACCAGTGAGCTCTTCCAG 467 223 459 Antisense
GTGTATTGCTTGTCAAATTCTACGA 510 485 529 Antisense
AAATCATACTCCAGAACTTGCGCCA 262 117 606 Antisense
AACTTGCGCCAGTGTTTCATACTAT 185 139 620 Antisense
GTCTCCACTACGTAATCTCGATCAC 657 469 678 Antisense
GGACAGTAGCTTAGTGAATCTTCAA 588 523 714 Antisense
GGATACTCGGAGTTGCTCATCGAAA 351 511 785 Antisense
AAACGCTGAGCGCACACAATGAGAT 186 127 815 Antisense
ACGACGAGACGGCTTTATGGAACGG 387 91 842 Antisense
GAAGCCATGTCGGGAATACCGTGGT 485 345 930 Antisense
Sequence Source Affymetrix Proprietary Database