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[179084_at]

Description F22B3.5 /REP_DB=WormBase Gene ID /WP=CE03256 /TR=Q19701 /GB=CAA92737.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 25.7
(-0.9)
A 		14.9
(-3)
A 		45.2
(3)
A 		31.1
(0.2)
A 		30
B 51.2
(1.4)
A 		69.5
(3)
A 		1.9
(-3)
A 		48.1
(1.1)
A 		68
C 35.6
(-3)
A 		55.1
(1)
A 		35.7
(-3)
A 		64.6
(3)
A 		29
avr 37.5
(-0.1) 		46.5
(2.6) 		27.6
(-3) 		47.9
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 38.1
(0.8)
A 		48.8
(3)
A 		19.1
(-3)
A 		22.8
(-2.3)
A 		40.7
(1.4)
A 		36.4
(0.5)
A 		30
B 38.1
(0)
A 		39.2
(0.1)
A 		31.7
(-0.8)
A 		63.3
(3)
A 		26.4
(-1.4)
A 		12.8
(-3)
A 		51
C 26.5
(1.2)
A 		3.7
(-2.9)
A 		9.7
(-1.8)
A 		3
(-3)
A 		36.7
(3)
A 		9.8
(-1.8)
A 		34
avr 34.2
(2.8) 		30.6
(1.4) 		20.2
(-2.8) 		29.7
(1) 		34.6
(3) 		19.7
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.4
(1.3)
A 		3.2
(-3)
A 		11.8
(3)
A 		4.5
(-2.1)
A 		9
B 16.3
(2.7)
A 		17.2
(3)
A 		0.4
(-3)
A 		10.3
(0.5)
A 		17
C 11.8
(-1.9)
A 		15.8
(3)
A 		12.4
(-1.2)
A 		10.9
(-3)
A 		5
avr 12.5
(3) 		12.1
(2.4) 		8.2
(-3) 		8.6
(-2.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7
(-1.7)
A 		17.4
(3)
A 		4.2
(-3)
A 		5.8
(-2.3)
A 		12.3
(0.7)
A 		8.9
(-0.9)
A 		13
B 13.3
(1.3)
A 		13.1
(1.2)
A 		7.7
(-1.6)
A 		16.8
(3)
A 		10.7
(-0.1)
A 		4.8
(-3)
A 		12
C 9.8
(1.9)
A 		1.1
(-2.7)
A 		2.5
(-2)
A 		0.6
(-3)
A 		11.9
(3)
A 		3.3
(-1.6)
A 		11
avr 10
(1.6) 		10.5
(2) 		4.8
(-3) 		7.7
(-0.4) 		11.6
(3) 		5.7
(-2.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9480
Sequence Type Exemplar sequence
Representative Public ID F22B3.5 NCBI
Target Description F22B3.5 /REP_DB=WormBase Gene ID /WP=CE03256 /TR=Q19701 /GB=CAA92737.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069756 NCBI Caenorhabditis elegans F22B3.5 (F22B3.5) mRNA, complete cds. 11/11 None
SNAP00000028589 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11413179:11414866:-1 10/11 None
GENEFINDER00000028596 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11413179:11414991:-1 11/11 None
F22B3.5 ENSEMBL cdna:known chromosome:CEL140:IV:11413179:11416511:-1 gene:F22B3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11413184-11416517(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22B3.5
Entrez Gene 184806 Entrez gene
SwissProt Q19701 EMBL-EBI
WormBase CE03256 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92737 Hypothetical protein F22B3.5 [Caenorhabditis elegans] ref|NP_502157.1| F22B3.5 [Caenorhabditis elegans] 0.0
blast CAA92737 Hypothetical protein F22B3.5 [Caenorhabditis elegans] ref|NP_502157.1| F22B3.5 [Caenorhabditis elegans] 1.0E-155
blast CAA92737 Hypothetical protein F22B3.5 [Caenorhabditis elegans] ref|NP_502157.1| F22B3.5 [Caenorhabditis elegans] 1.0E-152
blast CAE62119 Hypothetical protein CBG06159 [Caenorhabditis briggsae] 3.0E-90
blast CAE62119 Hypothetical protein CBG06159 [Caenorhabditis briggsae] 3.0E-86
blast CAE62119 Hypothetical protein CBG06159 [Caenorhabditis briggsae] 9.0E-72
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 2.0E-47
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 2.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502157.1 1 5-27
F22B3.5 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:179084_AT
tgctacggggtatctcttcgttactgataatacagtatggtttccaacaacggttaatta
cacaatcagtttggctggatcaaattggaaaatatcatatacttcaatccctatgtgttc
atcgagttacactaatttttatactctgcccaatggaaaatcaatgtgttttgtggttta
ttattcaaattcgacacttggcttatttcaaaattcatctcttcaaacgtgtaaatccat
aaatggaaatctgccaacagttactagttcagttgaaaatggcgcatttacatggctcgt
taatctatatattaaatttttcaagtcaagctcgttctacgttagaattgatggtaagag
aacaacggcatgccaatcaacaccaaaaacagctgcatgtatgtccccatctggtttcac
attcactgatcctcatttcttgggtaatttcaattattataactggacaacaaatgctgg
tgcaagggtggaaagtgatgatgattgtcttgttctcgtattcccaagcgttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTACGGGGTATCTCTTCGTTACT 532 559 690 Antisense
ATACTTCAATCCCTATGTGTTCATC 100 23 788 Antisense
CACTAATTTTTATACTCTGCCCAAT 277 195 819 Antisense
GGCGCATTTACATGGCTCGTTAATC 162 543 970 Antisense
TTTCAAGTCAAGCTCGTTCTACGTT 179 661 1008 Antisense
ACGGCATGCCAATCAACACCAAAAA 151 93 1054 Antisense
AAAACAGCTGCATGTATGTCCCCAT 278 131 1075 Antisense
CCCATCTGGTTTCACATTCACTGAT 347 259 1095 Antisense
CACATTCACTGATCCTCATTTCTTG 123 197 1107 Antisense
GATGATGATTGTCTTGTTCTCGTAT 244 411 1186 Antisense
GTTCTCGTATTCCCAAGCGTTGGAA 559 441 1201 Antisense
Sequence Source Affymetrix Proprietary Database