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[179079_at]

Description C50B6.1 /REP_DB=WormBase Gene ID /WP=CE08870 /TR=O17688 /GB=CAB02851.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 6.1
(-3)
A 		16.2
(-2.5)
A 		8.1
(-2.9)
A 		125.8
(3)
A 		120
B 5.6
(-3)
A 		41.7
(3)
A 		33.3
(1.6)
A 		10.2
(-2.2)
A 		36
C 31.9
(-2.9)
A 		59.1
(2.6)
A 		31.3
(-3)
A 		61.1
(3)
A 		30
avr 14.5
(-3) 		39
(-0.1) 		24.2
(-1.9) 		65.7
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 47
(2.7)
A 		49.4
(3)
A 		9.3
(-2.4)
A 		4.7
(-3)
A 		26.2
(-0.1)
A 		15
(-1.6)
A 		45
B 7.3
(-2.5)
A 		2.8
(-3)
A 		59
(3)
A 		37.6
(0.7)
A 		51.5
(2.2)
A 		24.8
(-0.7)
A 		56
C 34.2
(0.3)
A 		15.2
(-2.3)
A 		54.3
(3)
A 		10.1
(-3)
A 		28.9
(-0.4)
A 		29.8
(-0.3)
A 		44
avr 29.5
(0.1) 		22.5
(-1.7) 		40.9
(3) 		17.5
(-3) 		35.5
(1.6) 		23.2
(-1.5) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.2
(-3)
A 		3.5
(-2.5)
A 		2.1
(-3)
A 		18.4
(3)
A 		16
B 1.8
(-3)
A 		10.3
(3)
A 		7.7
(1.2)
A 		2.2
(-2.7)
A 		9
C 10.6
(-2.7)
A 		17
(3)
A 		10.9
(-2.5)
A 		10.3
(-3)
A 		7
avr 4.9
(-3) 		10.3
(3) 		6.9
(-0.8) 		10.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.7
(-0.3)
A 		17.6
(3)
A 		2
(-2.7)
A 		1.2
(-3)
A 		7.9
(-0.5)
A 		3.6
(-2.1)
A 		16
B 2.5
(-2.5)
A 		0.9
(-3)
A 		14.3
(1)
A 		10
(-0.3)
A 		20.9
(3)
A 		9.2
(-0.5)
A 		20
C 12.7
(2.4)
A 		4.6
(-1.7)
A 		13.8
(3)
A 		2
(-3)
A 		9.3
(0.7)
A 		10
(1.1)
A 		12
avr 8
(-0.4) 		7.7
(-0.6) 		10
(1) 		4.4
(-3) 		12.7
(3) 		7.6
(-0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13617
Sequence Type Exemplar sequence
Representative Public ID C50B6.1 NCBI
Target Description C50B6.1 /REP_DB=WormBase Gene ID /WP=CE08870 /TR=O17688 /GB=CAB02851.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073896(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073896 NCBI Caenorhabditis elegans C50B6.1 (C50B6.1) mRNA, complete cds. 11/11 None
SNAP00000011262 ENSEMBL cdna:SNAP chromosome:CEL140:V:13310875:13312015:1 11/11 None
GENEFINDER00000011292 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13310875:13312015:1 11/11 None
C50B6.1 ENSEMBL cdna:known chromosome:CEL140:V:13310875:13311772:1 gene:C50B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13310874-13311772(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50B6.1
Entrez Gene 183632 Entrez gene
SwissProt O17688 EMBL-EBI
WormBase CE08870 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02851 Hypothetical protein C50B6.1 [Caenorhabditis elegans] ref|NP_506297.1| C50B6.1 [Caenorhabditis elegans] 8.0E-73
blast CAB02851 Hypothetical protein C50B6.1 [Caenorhabditis elegans] ref|NP_506297.1| C50B6.1 [Caenorhabditis elegans] 9.0E-71
blast CAB02851 Hypothetical protein C50B6.1 [Caenorhabditis elegans] ref|NP_506297.1| C50B6.1 [Caenorhabditis elegans] 3.0E-64
Sequence
Target Sequence 
>C. ELEGANS:179079_AT
atgtcacgccatcatgtaactaaagaaggagagaaaaatggcgaaacactgttcactccc
gaacagttgcaactgctgagaagaggttttgcgcctttataccttcaagaagcctacaaa
aatcaagagaaagagagaaattggaggaaagagatcggaggatataaaatgaaacgacaa
cggcttccagccattacaggtcgacagaaagctatgcttctgcaagttatggaccgtacg
aaatggccacaaggctcagtcgatcggcagaaagttgccgataaggtaaatttggcatac
catcagataacacatcaataccgtgttcacccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCACGCCATCATGTAACTAAAG 701 47 13 Antisense
AAATGGCGAAACACTGTTCACTCCC 533 119 48 Antisense
TTCACTCCCGAACAGTTGCAACTGC 102 609 64 Antisense
GCTGAGAAGAGGTTTTGCGCCTTTA 33 295 87 Antisense
GCGCCTTTATACCTTCAAGAAGCCT 161 287 103 Antisense
AATGAAACGACAACGGCTTCCAGCC 344 165 180 Antisense
CTTCCAGCCATTACAGGTCGACAGA 456 217 196 Antisense
GCTTCTGCAAGTTATGGACCGTACG 32 307 228 Antisense
GGACCGTACGAAATGGCCACAAGGC 481 523 243 Antisense
GCCACAAGGCTCAGTCGATCGGCAG 298 277 258 Antisense
CACATCAATACCGTGTTCACCCAGA 483 193 323 Antisense
Sequence Source Affymetrix Proprietary Database