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[179077_at]

Description F53B7.4 /REP_DB=WormBase Gene ID /WP=CE05923 /TR=Q20717 /GB=CAA96653.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 109.1
(-3)
P 		142
(-0)
M 		158.3
(1.4)
A 		175.8
(3)
P 		67
B 119
(-0.7)
P 		86.7
(-3)
P 		89.5
(-2.8)
M 		172.3
(3)
P 		86
C 164.1
(3)
P 		153.5
(2)
P 		100.6
(-3)
A 		162
(2.8)
P 		64
avr 130.7
(-1.4) 		127.4
(-1.7) 		116.1
(-3) 		170
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 314.6
(3)
A 		116.2
(-2.2)
P 		107
(-2.4)
P 		92.7
(-2.8)
A 		112.1
(-2.3)
A 		83.7
(-3)
P 		231
B 123.7
(3)
P 		105.6
(1.4)
P 		55.2
(-3)
A 		113.4
(2.1)
A 		103
(1.2)
A 		59.3
(-2.6)
A 		69
C 126.1
(0)
P 		170.6
(3)
P 		126.6
(0.1)
A 		100.1
(-1.7)
P 		81.4
(-3)
A 		81
(-3)
P 		90
avr 188.1
(3) 		130.8
(-0) 		96.3
(-1.9) 		102.1
(-1.6) 		98.8
(-1.7) 		74.7
(-3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 39.7
(2.4)
P 		30.8
(-1.1)
M 		41.4
(3)
A 		25.7
(-3)
P 		16
B 37.9
(3)
P 		21.4
(-2.8)
P 		20.7
(-3)
M 		36.7
(2.6)
P 		17
C 54.3
(3)
P 		44.1
(0.7)
P 		35.1
(-1.3)
A 		27.3
(-3)
P 		27
avr 44
(3) 		32.1
(-2.1) 		32.4
(-1.9) 		29.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 58
(3)
A 		41.3
(0.3)
P 		23.3
(-2.5)
P 		23.5
(-2.5)
A 		33.8
(-0.9)
A 		20.4
(-3)
P 		38
B 43
(3)
P 		35.2
(1.4)
P 		13.4
(-3)
A 		30
(0.4)
A 		41.8
(2.8)
A 		22.1
(-1.2)
A 		30
C 46.8
(2)
P 		52.1
(3)
P 		32.2
(-0.7)
A 		20.1
(-3)
P 		26.3
(-1.8)
A 		27.1
(-1.7)
P 		32
avr 49.3
(3) 		42.9
(1.5) 		23
(-3) 		24.5
(-2.7) 		34
(-0.5) 		23.2
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13621
Sequence Type Exemplar sequence
Representative Public ID F53B7.4 NCBI
Target Description F53B7.4 /REP_DB=WormBase Gene ID /WP=CE05923 /TR=Q20717 /GB=CAA96653.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073403 NCBI Caenorhabditis elegans F53B7.4 (F53B7.4) mRNA, complete cds. 11/11 None
SNAP00000012647 ENSEMBL cdna:SNAP chromosome:CEL140:V:11003576:11004847:-1 11/11 None
GENEFINDER00000012649 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11003576:11005121:-1 11/11 None
F53B7.4 ENSEMBL cdna:known chromosome:CEL140:V:11003576:11005121:-1 gene:F53B7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11003575-11005121(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53B7.4
Entrez Gene 186156 Entrez gene
SwissProt Q20717 EMBL-EBI
WormBase CE05923 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96653 Hypothetical protein F53B7.4 [Caenorhabditis elegans] ref|NP_505804.1| F53B7.4 [Caenorhabditis elegans] 0.0
blast CAE75142 Hypothetical protein CBG23071 [Caenorhabditis briggsae] 1.0E-173
blast CAA96653 Hypothetical protein F53B7.4 [Caenorhabditis elegans] ref|NP_505804.1| F53B7.4 [Caenorhabditis elegans] 1.0E-171
blast CAE75142 Hypothetical protein CBG23071 [Caenorhabditis briggsae] 1.0E-145
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505804.1 1 200-222
F53B7.4 1 200-222
SNAP00000012647 2 119-141,151-173
GENEFINDER00000012649 1 200-222
Sequence
Target Sequence 
>C. ELEGANS:179077_AT
tgcatttattactccacgtacacctcacacttcatacagatatggtagagatgctttatc
atcaagtcagattatgttaattggattcttcgctttaaatggatcatttatagtattctt
tctgatattatcactatgttctgccggattgttctatcgttgcccattttatgccaaaaa
cagcaacgcgtctcggcacacttttattcgatatcttcgacaagcaattcctcctgcact
tgctccaccaccttcagttcaaggggaccaaccaaaagatgaaggagaaaagacattaac
tgttccgtctacacctacaggtcatacacgacatcgtcattcaattctgagcaggattaa
ttttcaacctgctcctgctttgagtgaaattgaacctgaagtggaggacagagagcaatc
accacaagaatcaatttgtgaaccacctgcacatcagccagaagtattccttcgacggca
aagtcttccatttggactcactgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATTTATTACTCCACGTACACCT 500 577 525 Antisense
GTACACCTCACACTTCATACAGATA 395 461 542 Antisense
CACTATGTTCTGCCGGATTGTTCTA 352 197 656 Antisense
GTTCTATCGTTGCCCATTTTATGCC 507 443 675 Antisense
CCAAAAACAGCAACGCGTCTCGGCA 649 275 698 Antisense
CGTCTCGGCACACTTTTATTCGATA 131 247 713 Antisense
CTCCACCACCTTCAGTTCAAGGGGA 94 235 767 Antisense
GACATTAACTGTTCCGTCTACACCT 432 367 816 Antisense
CAACCTGCTCCTGCTTTGAGTGAAA 706 185 889 Antisense
GAAGTATTCCTTCGACGGCAAAGTC 150 337 985 Antisense
AAGTCTTCCATTTGGACTCACTGCA 521 157 1005 Antisense
Sequence Source Affymetrix Proprietary Database