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[179076_at]

Description K10G4.3 /REP_DB=WormBase Gene ID /WP=CE16246 /TR=O45672 /GB=CAB07256.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      4grp_high_8_8 > 06      6grp_total > 66      4grp_total > 03      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 58.6
(-2.8)
P 		51.6
(-3)
P 		79.9
(-2.2)
P 		268.1
(3)
P 		217
B 90.2
(-1.9)
P 		44.6
(-3)
A 		43.1
(-3)
A 		292.9
(3)
P 		250
C 82.8
(-2.4)
P 		65.2
(-2.8)
P 		59.3
(-3)
P 		291.3
(3)
P 		232
avr 77.2
(-2.4) 		53.8
(-3) 		60.8
(-2.8) 		284.1
(3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 77.6
(-1.2)
P 		95.9
(0.3)
P 		94.7
(0.2)
P 		56.4
(-3)
P 		94.2
(0.1)
P 		128.9
(3)
P 		73
B 69.2
(-1.9)
P 		69.1
(-1.9)
P 		82
(-1.2)
P 		52.1
(-2.9)
P 		50.2
(-3)
P 		153.8
(3)
P 		104
C 65.1
(-2.9)
P 		64.3
(-3)
P 		77
(-1.6)
P 		75.6
(-1.8)
A 		70.2
(-2.4)
P 		118.9
(3)
P 		55
avr 70.6
(-2.2) 		76.4
(-1.8) 		84.6
(-1.1) 		61.4
(-3) 		71.5
(-2.2) 		133.9
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 21.3
(-0.8)
P 		11.2
(-3)
P 		20.9
(-0.9)
P 		39.2
(3)
P 		28
B 28.7
(-0.9)
P 		11
(-2.9)
A 		10
(-3)
A 		62.4
(3)
P 		52
C 27.4
(-1.3)
P 		18.8
(-3)
P 		20.7
(-2.6)
P 		49.1
(3)
P 		30
avr 25.8
(-1) 		13.7
(-3) 		17.2
(-2.4) 		50.2
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 14.3
(-3)
P 		34.1
(3)
P 		20.6
(-1.1)
P 		14.3
(-3)
P 		28.4
(1.3)
P 		31.4
(2.2)
P 		20
B 24.1
(-1.6)
P 		23
(-1.7)
P 		19.9
(-2.2)
P 		13.8
(-3)
P 		20.4
(-2.1)
P 		57.4
(3)
P 		44
C 24.1
(-0.8)
P 		19.6
(-1.9)
P 		19.6
(-1.9)
P 		15.2
(-3)
A 		22.7
(-1.2)
P 		39.8
(3)
P 		25
avr 20.8
(-1.7) 		25.6
(-0.6) 		20
(-1.8) 		14.4
(-3) 		23.8
(-1) 		42.9
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14632
Sequence Type Exemplar sequence
Representative Public ID K10G4.3 NCBI
Target Description K10G4.3 /REP_DB=WormBase Gene ID /WP=CE16246 /TR=O45672 /GB=CAB07256.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074973 NCBI Caenorhabditis elegans K10G4.3 (K10G4.3) mRNA, complete cds. 11/11 None
SNAP00000034106 ENSEMBL cdna:SNAP chromosome:CEL140:V:17266643:17267530:-1 11/11 None
GENEFINDER00000034122 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17265455:17267530:-1 11/11 None
K10G4.3 ENSEMBL cdna:known chromosome:CEL140:V:17266643:17267530:-1 gene:K10G4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17266642-17267530(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10G4.3
Entrez Gene 187278 Entrez gene
SwissProt O45672 EMBL-EBI
WormBase CE16246 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07256 Hypothetical protein K10G4.3 [Caenorhabditis elegans] ref|NP_507374.1| K10G4.3 [Caenorhabditis elegans] 8.0E-84
blast CAB07256 Hypothetical protein K10G4.3 [Caenorhabditis elegans] ref|NP_507374.1| K10G4.3 [Caenorhabditis elegans] 1.0E-83
blast CAA21034 Hypothetical protein Y32B12C.1 [Caenorhabditis elegans] ref|NP_507201.1| Y32B12C.1 [Caenorhabditis elegans] 2.0E-20
blast CAA21034 Hypothetical protein Y32B12C.1 [Caenorhabditis elegans] ref|NP_507201.1| Y32B12C.1 [Caenorhabditis elegans] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:179076_AT
gcatttacgcgacttggatatcttgataaaattaacaaagcattggatgactgaggaact
aaccgatcatatgagctacaacagagccatcgaatgggataagctcattattaaacttga
aaaagttccaaaaaaactgtctcttaattctaaaaagtatttagcaatccttgttgatga
attctgcatggatacgccaagatacggaattagcccctggtttgctcactacatcctatg
ctattgcaaacataatctggacgacgctcgcgaaatattaatcgccaataagtggaaatt
ggaaaatattgaagaatcttatgaaaaaatttccgaattccaaagacaactagacttgaa
tcgtaacaaccaaaacaatgacaaaatttatgaagccattaaaaaagaaaaagaaaagat
caggaagaatgtctatgaaagaaatgaacagttgcgagactttaagaacattccatacgg
attccagccaaccttagaacttcacaaccttatgcaggaccagattgaggatttcatcga
agaatatcttggacagtacttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTTACGCGACTTGGATATCTTG 504 307 15 Antisense
GAGGAACTAACCGATCATATGAGCT 313 403 67 Antisense
AGTATTTAGCAATCCTTGTTGATGA 316 63 170 Antisense
GATGAATTCTGCATGGATACGCCAA 532 411 190 Antisense
GATACGGAATTAGCCCCTGGTTTGC 444 421 215 Antisense
TGCTCACTACATCCTATGCTATTGC 239 581 237 Antisense
AACATAATCTGGACGACGCTCGCGA 48 139 263 Antisense
ATTCCATACGGATTCCAGCCAACCT 542 1 484 Antisense
TCCAGCCAACCTTAGAACTTCACAA 537 589 497 Antisense
GAACTTCACAACCTTATGCAGGACC 209 349 511 Antisense
AGAATATCTTGGACAGTACTTGGAA 427 75 555 Antisense
Sequence Source Affymetrix Proprietary Database