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[179075_at]

Description T02D1.4 /REP_DB=WormBase Gene ID /WP=CE16324 /TR=O45728 /GB=CAB05907.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 46      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 76
(3)
A 		28.7
(-1)
A 		4.7
(-3)
A 		16.9
(-2)
A 		71
B 104.3
(3)
A 		5.5
(-3)
A 		10.2
(-2.7)
A 		22.9
(-1.9)
A 		99
C 101.7
(3)
A 		62.8
(0.4)
A 		10.9
(-3)
A 		16.1
(-2.7)
A 		91
avr 94
(3) 		32.3
(-1.3) 		8.6
(-3) 		18.6
(-2.3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 70.1
(1.9)
A 		78.1
(2.5)
A 		84
(3)
M 		15.6
(-2.6)
A 		78.7
(2.6)
A 		10.2
(-3)
A 		74
B 38.4
(-2.5)
A 		95.5
(3)
A 		48
(-1.6)
A 		59.1
(-0.5)
A 		52.7
(-1.1)
A 		33
(-3)
A 		63
C 68.1
(3)
A 		58.8
(2)
A 		59.6
(2.1)
A 		19.2
(-2.4)
A 		23.4
(-1.9)
A 		13.9
(-3)
A 		54
avr 58.9
(1.1) 		77.5
(3) 		63.9
(1.6) 		31.3
(-1.7) 		51.6
(0.3) 		19
(-3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 27.7
(3)
A 		6.2
(-1.9)
A 		1.2
(-3)
A 		2.5
(-2.7)
A 		27
B 33.3
(3)
A 		1.4
(-3)
A 		2.4
(-2.8)
A 		4.9
(-2.3)
A 		32
C 33.7
(3)
A 		18.1
(-0)
A 		3.8
(-2.8)
A 		2.7
(-3)
A 		31
avr 31.6
(3) 		8.6
(-1.7) 		2.5
(-3) 		3.4
(-2.8) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 12.9
(-0.5)
A 		27.8
(3)
A 		18.3
(0.7)
M 		4
(-2.6)
A 		23.7
(2)
A 		2.5
(-3)
A 		25
B 13.4
(-2.5)
A 		31.8
(3)
A 		11.7
(-3)
A 		15.6
(-1.8)
A 		21.4
(-0.1)
A 		12.3
(-2.8)
A 		20
C 25.2
(3)
A 		17.9
(0.9)
A 		15.2
(0.2)
A 		3.9
(-3)
A 		7.6
(-2)
A 		4.6
(-2.8)
A 		21
avr 17.2
(0.3) 		25.8
(3) 		15.1
(-0.3) 		7.8
(-2.6) 		17.6
(0.5) 		6.5
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8990
Sequence Type Exemplar sequence
Representative Public ID T02D1.4 NCBI
Target Description T02D1.4 /REP_DB=WormBase Gene ID /WP=CE16324 /TR=O45728 /GB=CAB05907.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070703(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070703 NCBI Caenorhabditis elegans T02D1.4 (T02D1.4) mRNA, complete cds. 11/11 None
T02D1.4 ENSEMBL cdna:known chromosome:CEL140:IV:17399731:17401663:1 gene:T02D1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17399736-17401669(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02D1.4
Entrez Gene 187984 Entrez gene
SwissProt O45728 EMBL-EBI
WormBase CE16324 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05907 Hypothetical protein T02D1.4 [Caenorhabditis elegans] ref|NP_503104.1| T02D1.4 [Caenorhabditis elegans] 0.0
blast CAE57447 Hypothetical protein CBG00409 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503104.1 6 88-110,130-148,163-185,209-227,268-290,311-333
T02D1.4 6 88-110,130-148,163-185,209-227,268-290,311-333
Sequence
Target Sequence 
>C. ELEGANS:179075_AT
gtgttatcttcacgtgtttttcccgtcccactcaaaaagtctttgcaccaagagaaatct
ctcacgaagctatttcattattcttgttgttggtgccttattggcattgatgtataagtt
caatcgaagtgttacattgagcacacattgcaaccgcgttataccgacaattcacgcttc
tgaagattttgtaatgatctgtctggaaaagatccacacatttgcaaacctcctcttcgc
tattgtcgtcccaatgggtctgcttctcttcatggcagcgtcaattctttggaagttggt
cttgaagcgaagcgattttgtatcgcacttcacagcagaaaaacgttgtgtgacacggat
tactctaatcaccacaggacttcaattaattgctgaacttcccccaattcctgttttctt
gtatgctactattttcggaccagctgtcaccaacgagcctgctatttgcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTATCTTCACGTGTTTTTCCCG 78 485 579 Antisense
TGAGCACACATTGCAACCGCGTTAT 276 569 716 Antisense
TTATACCGACAATTCACGCTTCTGA 669 679 737 Antisense
AAAGATCCACACATTTGCAAACCTC 133 123 786 Antisense
ATTGTCGTCCCAATGGGTCTGCTTC 318 5 820 Antisense
TCTGCTTCTCTTCATGGCAGCGTCA 345 607 837 Antisense
CGATTTTGTATCGCACTTCACAGCA 598 247 891 Antisense
CAATTAATTGCTGAACTTCCCCCAA 7 179 961 Antisense
AATTCCTGTTTTCTTGTATGCTACT 36 177 984 Antisense
TACTATTTTCGGACCAGCTGTCACC 201 645 1005 Antisense
CACCAACGAGCCTGCTATTTGCGTC 121 203 1026 Antisense
Sequence Source Affymetrix Proprietary Database